UFO09663.5prime Sequence
1121 bp (1021 high quality bases) assembled on 2011-09-06
> UFO09663.5prime
CAGTCGACATGGCCACCTTAAAGGCCCTCTTCATCTGCGCCTTTCTTACA
TGCATTGGTGTTACCTTCCTGATCCTGGCCTGCGCCGTGCCCACGACAAA
GATTTTCTATCCCTTCTTCGTTTTGCTGTTCTACGTGCTGTCAGTTCTTC
CAGTCTTCATTGCCAGGAGGACAACTCCTGGAAATGAGACCAATCCGAAA
TCGGAGTTTGCTCACTTCCTTACCGCGGGAATGGTGCTGAGTGCCTTCGC
CCTGCCCATCGTCCTAGCCCACGCATTGGTGATCACCTGGACGGCGAGTA
TCCTGACGATAATAAGTAACATTATTAACTACGGCACCATCTTCTGGTAC
GCCATGCGCGATGACGAGCCATACGGATCCATGTTCGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGA
AAACATATTCTCAATAAACCCTTTAGGAAATAGGCCAGGTTTTCACCGTA
ACACGCCACATCTTGCGATATATGTGTAGAACTGCCGGAAATCGTCGTGT
ATCACTCCAGAGCGATGAAACGTTTCAGTTTGCTCATGAAAACGTGTACA
GTGACACTATCCCATATCACAGCTCACGTCTCATGGCATACGAAATCGAT
GAACATTCATCAGCGCAGATGTATTAGCGGATAACTGGCCTATCCTACGC
CTTCAGCTATCACTACGCGTA
UFO09663.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:28:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30423-RE | 655 | CG30423-RE | 86..463 | 9..386 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24875338..24875593 | 281..26 | 1280 | 100 | Minus |
| 2R | 25286936 | 2R | 24875168..24875273 | 386..281 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:28:30 has no hits.
UFO09663.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:09 Download gff for
UFO09663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30423-RC | 57..434 | 9..386 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:28:21 Download gff for
UFO09663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30423-RD | 86..463 | 9..386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:27 Download gff for
UFO09663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30423-RE | 86..463 | 9..386 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:27 Download gff for
UFO09663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24875168..24875272 | 282..386 | 100 | <- | Minus |
| 2R | 24875338..24875593 | 25..281 | 99 | <- | Minus |
| 2R | 24875765..24875780 | 9..24 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:28:21 Download gff for
UFO09663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20762691..20762795 | 282..386 | 100 | <- | Minus |
| arm_2R | 20762861..20763116 | 25..281 | 99 | <- | Minus |
| arm_2R | 20763288..20763303 | 9..24 | 100 | | Minus |
