UFO09664.5prime Sequence
1114 bp (1007 high quality bases) assembled on 2011-09-06
> UFO09664.5prime
CAGTCGACATGGCCACCGCCACCGTTGGTTCATCCAGATCCGCAACCACA
TCCGCAACCGCATCCGCATGCTCATCCAAATCCAAGAACCTAAAGAATCC
GGCGCCGCAAATAAAAAGGGGACAGCGGATCCTCACGGAGAAACCATTCG
CCTTCGTCTTGAAATCACAGTACCGCCTGGAGCGGTGCGATAACTGCCTG
GAGGCGACCAAGGTGCTGAAGTGCTCCAACTGCAGGTATGTGTCCTACTG
CCACCGCTCATGCCAGATGCAAGCTTGGGGCCAGCACAAGCACGAGTGTC
CTTTCCTCAAGAAGGTGCATCCTCGAGTTGTGCCCGATGCTGCCCGAATG
CTCTGCCGACTGATCCTGCGCCTGGAGCACGGCGGAGACCTGATCCGCGG
CTATTACACCGAGCACGGCTCCCGCAAGTTTCGCGATCTCATGTCCCATT
ACGCCGAAATCAAGAACGATCCCATGCGACTGGAGCACTTGGACTCGCTG
CATGCCGTCCTCACCGATATGATGGCCGAGAGTCCCAGCACGGTGCCAAA
CAAGACGGAACTGATGAGCATCTATGGTCGCCTGATCACCAATGGCTTCA
ATATCTTGGACGCCGAGATGAACTCAATTGCCACGGCCATATATCTGGGC
GTCTCGATTACGGACCATAGCTGCCAGCCAAATGCGGTCGCCACCTTCGA
GGGCAACGAGCTGCACGTCCACGCGATCGAGGACATGGAATGCCTGGACT
GGTCGAAAATCTTCATCAGCTACATCGACCTGCTCAATACGCCGGAGCAG
AGGCGTCTGGACCTCAAGGAGCACTACTACTTCCTATGCGTGTGCAGCAA
GTGCACGGATGCCAAGGAATCGAAAGGAGATGCTGGCTGCCCTGTGTCCC
AATCGCAACTGCGGTGCGGGAATCAGTGTGGACCGCAATATTTGCCCGCG
ATGCGATGCCGCATCAGTCCCAAGTTGAGAAATGCCTTCACGAGGCGATG
ACTCTGACCGGCACAATCTGAGAACATGAAGGACGTGCTATTTCCGATGT
GGTGCAGGTGTTGTTCTGACAGGCAGACTGGCTGTTCATCCCTGGATGTG
TGTTGTAACGCTCC
UFO09664.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bzd-RB | 1762 | CG13761-RB | 206..1309 | 5..1102 | 5080 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2607266..2607724 | 1037..582 | 2035 | 98.7 | Minus |
| X | 23542271 | X | 2608171..2608412 | 447..206 | 1210 | 100 | Minus |
| X | 23542271 | X | 2608470..2608671 | 206..5 | 995 | 99.5 | Minus |
| X | 23542271 | X | 2607970..2608103 | 581..448 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:28:33 has no hits.
UFO09664.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:09 Download gff for
UFO09664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bzd-RB | 1..1051 | 9..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:28:51 Download gff for
UFO09664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bzd-RB | 202..1260 | 1..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:29 Download gff for
UFO09664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bzd-RB | 202..1260 | 1..1056 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:29 Download gff for
UFO09664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2607266..2607724 | 582..1037 | 98 | <- | Minus |
| X | 2607970..2608103 | 448..581 | 100 | <- | Minus |
| X | 2608171..2608412 | 206..447 | 100 | <- | Minus |
| X | 2608471..2608673 | 1..205 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:28:51 Download gff for
UFO09664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2501299..2501757 | 582..1037 | 98 | <- | Minus |
| arm_X | 2502003..2502136 | 448..581 | 100 | <- | Minus |
| arm_X | 2502204..2502445 | 206..447 | 100 | <- | Minus |
| arm_X | 2502504..2502706 | 1..205 | 98 | | Minus |
