UFO09665.5prime Sequence
1106 bp (992 high quality bases) assembled on 2011-09-06
> UFO09665.5prime
CAGTCGACATGTCGTCGCCTTTGATCTGCTTGGCCATATTCCAGCTGATT
TTCCAGTTGATCCTGGCCAAGGATTATTCCTGGTGTGATCCAGATTTATG
CGGCAATGGCGTCAGACATATCGCGTGCCGAACAACTGGAAATTTCCACA
GGCGCTGCCAACCAGATGCAGTCCAAGTGGATGTAAGCCGGCACAAGGCG
GATTTCCTGCATGCCCACAACAAGAGGAGGAACTTCCTGGCTCTAGGAAA
AGTGCCAGGCTATTATCCTGCCGCCAGAATGGCCACAATGGTGTGGGACG
ACGAGCTGCAGTACTTGTCCATGCTAAATACCCGCACCTGTAAGTTGGAC
CACGATGATTGCCACAACACCTACCGGTACGCCAACTCGGGTCAGAATCT
GTGTGCCGTGTGGCGTCCACGGAGTCCACATGTGAATGTGACTAGCTTGG
TGGAGGAGTGCCTGGGTCTCTGGTTCAACGAGTTCGATCTGATAGACAGC
AGCTTCATCGATTCTTTTAAAGTCACGCCCATATTTGAGGACTACGGTCA
CTTTGCCGAGTTAAGTGTGGACAAAAACTTCGCCGTGGGCTGCTCCATCA
TGAGATTTACTCGTCCCGACTATCCATCCGTGTATATCTACAACTTTATC
TGCAACTATGCTTCACTCTACGCCTTGGGCGCTCCAGTTTATGAGACTGG
ACGAGCGGCCTCCCGTTGCACCACGGGCAAGAGCCACTTCTATCCGGGAT
TATGTTCCACCCGCGAGGTGTACGATCCCAATTGGGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
TTCAGATGGAGTTCTGAGTCATTACTGGATTCTATCACAGAGTCAGTGAG
CTCGAATATCAAATTACGCCCGCCTGCCACTCAATCGCAGTTACTTGTTT
GTTATTCATTAGCATCTTGCGACTGAGCCATCCAACCGGCATGATGACTG
GATTCG
UFO09665.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17974-RA | 1033 | CG17974-RA | 144..920 | 9..785 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21349058..21349307 | 785..536 | 1250 | 100 | Minus |
| 2R | 25286936 | 2R | 21349367..21349612 | 535..290 | 1230 | 100 | Minus |
| 2R | 25286936 | 2R | 21349670..21349821 | 292..141 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 21350304..21350435 | 140..9 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:28:37 has no hits.
UFO09665.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:10 Download gff for
UFO09665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17974-RA | 401..1194 | 1..793 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:29:22 Download gff for
UFO09665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17974-RA | 135..928 | 1..793 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:31 Download gff for
UFO09665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17974-RA | 135..928 | 1..793 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:31 Download gff for
UFO09665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21349050..21349307 | 536..793 | 98 | <- | Minus |
| 2R | 21349367..21349611 | 291..535 | 100 | <- | Minus |
| 2R | 21349672..21349821 | 141..290 | 100 | <- | Minus |
| 2R | 21350304..21350442 | 1..140 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:29:22 Download gff for
UFO09665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17236555..17236812 | 536..793 | 98 | <- | Minus |
| arm_2R | 17236872..17237116 | 291..535 | 100 | <- | Minus |
| arm_2R | 17237177..17237326 | 141..290 | 100 | <- | Minus |
| arm_2R | 17237809..17237947 | 1..140 | 97 | | Minus |
