UFO09666.5prime Sequence
1154 bp (1039 high quality bases) assembled on 2011-09-06
> UFO09666.5prime
ACACCATGGTGAGCAAGGGCGAGGAGGATAACATGGCCATCATCAAGGAG
TTCATGCGCTTCAAGGTGCACATGGAGGGCTCCGTGAACGGCCACGAGTT
CGAGATCGAGGGCGAGGGCGAGGGCCGCCCCTACGAGGGCACCCAGACCG
CCAAGCTGAAGGTGACCAAGGGTGGCCCCCTGCCCTTCGCCTGGGACATC
CTGTCCCCTCAGTTCATGTACGGCTCCAAGGCCTACGTGAAGCACCCCGC
CGACATCCCCGACTACTTGAAGCTGTCCTTCCCCGAGGGCTTCAAGTGGG
AGCGCGTGATGAACTTCGAGGACGGCGGCGTGGTGACCGTGACCCAGGAC
TCCTCCCTGCAGGACGGCGAGTTCATCTACAAGGTGAAGCTGCGCGGCAC
CAACTTCCCCTCCGACGGCCCCGTAATGCAGAAGAAGACCATGGGCTGGG
AGGCCTCCTCCGAGCGGATGTACCCCGAGGACGGCGCCCTGAAGGGCGAG
ATCAAGCAGAGGCTGAAGCTGAAGGACGGCGGCCACTACGACGCTGAGGT
CAAGACCACCTACAAGGCCAAGAAGCCCGTGCAGCTGCCCGGCGCCTACA
ACGTCAACATCAAGTTGGACATCACCTCCCACAACGAGGACTACACCATC
GTGGAACAGTACGAACGCGCCGAGGGCCGCCACTCCACCGGCGGCATGGA
CGAGCTGTACAAGGGGAATTCGATAACTTCGTATAGCATACATTATACGA
AGTTATCAGTCGACATGCCTAAGGAAACCGTAATTTTGGCTTACTCCGGT
GGCCTGACACTAGTTGCGTCCTCAAGTGGTTGCTGGACAAGCAGTATGAG
GTCATTTGCGTCCTGGCGATGTAGGCCAGAGGAAGATTTCACCGCCGCCG
AGAAGAGGCTCTTAAGATTGGCGCATAAAGGTTATCGTGGCCGATGTCAA
GCAGTCCTTCGTCGAGGACTATATCTGGCCGGCCGTACAAATGGGTCTGG
TGTACGAGGAGCGCTATCTACTGGGCACTTCTCCTGGCCAGGTCCTGCAT
CATGTAGCCCTGATGGAGGTCCCCCCCGGGAGTATGGAGCAGTATTCTGG
CCCACGGGAGCCCGGAAAGGGCAACGACAGGTGGCTCGGTTGGTGGCCCT
ACGC
UFO09666.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1315-RB | 1456 | CG1315-RB | 49..423 | 765..1133 | 1455 | 94.5 | Plus |
| CG1315-RA | 1409 | CG1315-RA | 49..423 | 765..1133 | 1455 | 94.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6644218..6644386 | 929..765 | 630 | 97 | Minus |
| 3R | 32079331 | 3R | 6643965..6644111 | 1075..929 | 610 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:28:40 has no hits.
UFO09666.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:11 Download gff for
UFO09666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1315-RA | 43..423 | 758..1133 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:29:51 Download gff for
UFO09666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1315-RA | 43..423 | 758..1133 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:32 Download gff for
UFO09666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1315-RA | 43..423 | 758..1133 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:32 Download gff for
UFO09666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6643906..6644113 | 924..1133 | 91 | -> | Minus |
| 3R | 6644224..6644397 | 755..923 | 94 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:29:51 Download gff for
UFO09666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2469628..2469835 | 924..1133 | 91 | -> | Minus |
| arm_3R | 2469946..2470119 | 755..923 | 94 | -> | Minus |
