UFO09667.5prime Sequence
1059 bp (949 high quality bases) assembled on 2011-09-06
> UFO09667.5prime
CAGTCGACATGGTTCTTCGGGTGGAAAAATTTCTACTGCTAGCGATAGCT
ATTGGCGCCGTAATGGGCAGCTCCCAGGGAGCTAATATTCTAGGACTCTT
CCCGAGCCTGAGTCCCTCGCACTTGATCATCCAAATGTCCGCGGCCAAAG
TTCTGGCCGAGAATGGACACAATGTGACGGTGGTCACCGTGCTGAAGCCA
GTGGTTAACCATAAAAACATAACCGTGATCCAAGTGCCGCTTAGTAAGGA
AGAAGCCCAGCAAATGAGCGATACGATTGGAGCGATGTCCAAGAACGACA
ATAGCAACATGGCCTTATCCCTGCTCCGGATGTCGGATCAAATGGATTTC
ATGATCAGAAAGAATGCCGAGACCCTGATGAACGATCGAGTGAGGGATCT
GTACCTGAACCGTGGAAACAAGTTCGACCTGGTTATTTCTGGATACTTTA
TGAACGATTTCCAGCTCGGATTCGCAAGGAAAGTCAACGCACCCGTCATC
GTATTGGCCACAATGCCTCCCAATCATCTATTGAACCCCCTGATCGGTAA
TCCCCTGGAGGTTTCCTATGCCGGAATCAGTAATCCTGCAGAGGGCAGTA
AAGCCGTAACCTTCCAACGGCGTTTATCCAGCTATATGCAATGCCTCGGT
TTCGGTGTCTTTTCTCATCTTTCCGAGCGGCGTAATCGAAATTGGTACAA
GGAAGTTTATGGCAACGATCCCAAAATGCCTGAGTACTCGGAAATGCTCA
AGAACACATCGTTGGTTTTCTTCAGTTCGCACGCGGCCAGTGAAGGACCT
ATTAGACCTAATGTTCCTTCTGCCATAGAAATCGGTGGAATTCAGATTAA
GGACAAGCCGGATCCCCTTCCCCTGACATTGCGGAGTTTTGGGCAATGCT
ACAGATGGAGCTATCTCTCTCCCTGGGTCTAATGTCAGGAAAGCATCTAA
ACCAGACCAGTGCCAAGATGTTCACGTCTTCAAACTGAAGAAAGTGATTT
GAGTGGGAGACAAGATCGCAAGAATAGCTAATTCTTACTCGAATGCTTCG
CAGACGAAT
UFO09667.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5999-RB | 1667 | CG5999-RB | 1..1024 | 5..1009 | 4600 | 97.7 | Plus |
| CG5724-RA | 1710 | CG5724-RA | 93..928 | 84..914 | 1030 | 75.9 | Plus |
| Ugt37a1-RA | 1623 | CG11012-RA | 66..182 | 84..200 | 225 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:28:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12742979..12743680 | 706..5 | 3450 | 99.4 | Minus |
| 3R | 32079331 | 3R | 12739734..12740220 | 84..570 | 965 | 79.9 | Plus |
| 3R | 32079331 | 3R | 12742713..12742928 | 914..701 | 950 | 98.1 | Minus |
| 3R | 32079331 | 3R | 12740436..12740585 | 717..866 | 300 | 80 | Plus |
| 2L | 23513712 | 2L | 20373902..20374018 | 200..84 | 225 | 79.5 | Minus |
| 2L | 23513712 | 2L | 16794288..16794414 | 73..199 | 200 | 77.2 | Plus |
| 2L | 23513712 | 2L | 6225134..6225239 | 73..178 | 200 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:28:43 has no hits.
UFO09667.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:12 Download gff for
UFO09667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5999-RB | 1..1005 | 5..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:30:23 Download gff for
UFO09667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5999-RB | 1..1005 | 5..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:35 Download gff for
UFO09667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5999-RB | 1..1005 | 5..994 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:35 Download gff for
UFO09667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12742620..12742928 | 701..994 | 94 | <- | Minus |
| 3R | 12742985..12743683 | 1..700 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:30:23 Download gff for
UFO09667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8568342..8568650 | 701..994 | 94 | <- | Minus |
| arm_3R | 8568707..8569405 | 1..700 | 99 | | Minus |
