UFO09668.5prime Sequence
1108 bp (993 high quality bases) assembled on 2011-09-06
> UFO09668.5prime
CAGTCGACATGGCGCCCGTTTCAAAACGCCGTTTACCGAAAAAATCGAAT
ACAAATGTAAAAGTAACGAGCACACTTTCGAAAATTATAATGCAAGGAAC
TGAACAGTTGTTGGACTCGGGAAATAATACAAATATTCATGTTATTGAAA
AACCCCGAATGGTGCGGTATTCAAATTCATCGCTTTACAGTGCGTTAGCC
GAGGGCCATTCCACACCGGAAATAAATATTGTGGCAAGTAATAGCAACGC
ACATGGCAAGGTAGAGCTTAATTCTGAAATCAGCGATATGTCTATTGCAT
CAGTGTCGGTGAGAAATAAACCGTTTGTGAACTTTCTCCAGGATTTCTCC
ATAGCTCATGGTTCCGTACCCCGAGAAAGTATTCAGCAGGCCATCGTCGA
GTGGGATAAACTGACAGCTGAGCAAAAACAAGAATATACTCCTGAAAACT
ACGTTCTAAAATTATGTGATCAAGTGCATAATCGTGACGAAATTTTAAAT
GCAGCTACACTGCATCCGGTATATCCAATTACAACCAAAATACAGAATGC
ATTTAATGAAGCCAGTACGTCCATGAAATCTGAAAAGTATGCGAAGAAGA
TCTCGTCCCCAAAAATACGTAAGACAATTAAGCGTTTAAAACCAAAACCA
CGAGTTCTGGTGACTCCCAGAAAATCAGCCAAAAATGCTGGCAAAAAGAA
TATAATTTATAGTGGTTCGGCTTACAAAAACTTTCTGCGAAAAACCGGTC
AAGCCAATCCCGGTCTGATGATTGTGGAAAAGCCTCATTATGGCGTAAAA
TGACTCCTGCCGAAAGGGATCTCTATCGGAATGTGAGCAGACCAAGGCGC
CAGACACCAAAGTATCCAGAGTTGACGCTCCCAAGCGCGAAAAGAAGCGT
AAAACCTCACAGTTCACCCAGATTTCAGAAAGTGATTTTTCGGAAACTAA
TTTCATATCAGCGAGATGGCCAGCTAGAAGTTTGGAATGAAGTACAATCC
CTAGAGAGCAACGCTCCTGGTTCAATTGATACATGCTAAGCACTGAACAG
TCAAGAATTATTAGCAAGCCTTCTGACATCCGTGACCGCGGTCAAGTATG
GTCTAATC
UFO09668.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst33A-RB | 1328 | CG6541-RB | 158..1223 | 9..1056 | 4910 | 98.3 | Plus |
| Mst33A-RA | 1342 | CG6541-RA | 172..1237 | 9..1056 | 4910 | 98.3 | Plus |
| Mst33A-RC | 1261 | CG6541-RC | 422..1156 | 340..1056 | 3255 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:28:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11585619..11586603 | 989..9 | 4730 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:28:46 has no hits.
UFO09668.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:12 Download gff for
UFO09668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst33A-RB | 5..1087 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:30:54 Download gff for
UFO09668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst33A-RA | 165..1247 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:37 Download gff for
UFO09668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst33A-RA | 165..1247 | 1..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:37 Download gff for
UFO09668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11585527..11586609 | 1..1067 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:30:54 Download gff for
UFO09668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11585527..11586609 | 1..1067 | 97 | | Minus |
