UFO09669.5prime Sequence
1087 bp (966 high quality bases) assembled on 2011-09-06
> UFO09669.5prime
CAGTCGACATGGTGGATAATGAGGAAACGGGATGCCTTCAAAGATTACTC
AGCGTTGGAAAGCTACAGATTTGCAAGTTCATAATCTACTTTGTGTGGTT
GGTCAATTTCATTTTCAGCTGTGCGGATATTTACATATACTATTTCATAC
TGAAGGAACACATGCCTTGCTGGGATTGTTTGTTCAGGTCCTACATGATA
ATCGCTCTAACCGTAAATGCCCTAATGGCGCCGCTGCTGATAGTCGGTTT
TTTCTTCATATATTCGCATTTATGCCGCGAAATACGCATTTATGCCACAG
TACTCTTCCTGGCAACATGGTTGCAGATGATGCTGACTATACTGTTTGCA
CAACAGTACCAAATTGTTGGAGATGTACTTCGAATATGGATGAATCGCAA
GAGTTTGGAATTCTACGAAAGTCGCTGCCAGTGCTGCGGAGTTTTGGGAC
CTGACGACTACAAGTTGGGCGATCTGAATATCCCAAAATCCTGTTACAAG
AATGGCAGTGAAAGGGATGAGGACCTGTACCGATCAGGCTGCTCCACGCG
CTCCATAAAGCCCGCGTCGCCCATCATCCATGTGATCTCCTTCGTAATTC
AGTATGTTTTAGTCATGTGCATTGAGGTATTCCTTGTTATCCTGTTAAGG
AGCAAATCCCAACCCACAAGTATGTGGTCTGAGCGGGTCACCGAAAGGTT
TGGTAGTGTAAAAAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCAGATGGAGTTCTGA
GGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAAT
GTACCGCCCCGCCCTGCACTCATCGCAGTACTGTGTAATCATAGCATTCT
GCGACATGTAGGCATCACAACGGCATGATGAACTGATCGCAGCGCATCAG
ACCTTGTTGCTTGCGTATATATTGCCATAGTGAACGG
UFO09669.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42661-RA | 2531 | CG42661-RA | 1275..1982 | 9..716 | 3510 | 99.7 | Plus |
| CG42660-RA | 2531 | CG42660-RA | 1275..1982 | 9..716 | 3510 | 99.7 | Plus |
| Tsp66A-RC | 1308 | CG16991-RC | 52..759 | 9..716 | 3510 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7467478..7467657 | 111..290 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 7467920..7468096 | 426..602 | 885 | 100 | Plus |
| 3L | 28110227 | 3L | 7467724..7467858 | 291..425 | 675 | 100 | Plus |
| 3L | 28110227 | 3L | 7468144..7468259 | 601..716 | 550 | 98.3 | Plus |
| 3L | 28110227 | 3L | 7467319..7467420 | 9..110 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:28:50 has no hits.
UFO09669.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:13 Download gff for
UFO09669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp66A-RD | 1275..1988 | 9..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:31:22 Download gff for
UFO09669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42661-RA | 1275..1988 | 9..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:39 Download gff for
UFO09669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp66A-RC | 52..765 | 9..724 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:39 Download gff for
UFO09669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7467920..7468096 | 426..602 | 100 | -> | Plus |
| 3L | 7468146..7468268 | 603..728 | 93 | -> | Plus |
| 3L | 7467478..7467657 | 111..290 | 100 | -> | Plus |
| 3L | 7467724..7467858 | 291..425 | 100 | -> | Plus |
| 3L | 7467319..7467420 | 9..110 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:31:22 Download gff for
UFO09669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7460419..7460520 | 9..110 | 100 | -> | Plus |
| arm_3L | 7460578..7460757 | 111..290 | 100 | -> | Plus |
| arm_3L | 7460824..7460958 | 291..425 | 100 | -> | Plus |
| arm_3L | 7461020..7461196 | 426..602 | 100 | -> | Plus |
| arm_3L | 7461246..7461368 | 603..728 | 93 | -> | Plus |
