UFO09673.5prime Sequence
1108 bp (1021 high quality bases) assembled on 2011-09-06
> UFO09673.5prime
CAGTCGACATGGCTGCTATTGCCGCCCTGCCAACAACAACGTTGCGGCGC
AACAACAACAACAACACCAAAGGGATCAAATCCCGTCGCAATGAGCGTAA
CATCCTGACATTCTACGAAAAGATTGCCGTAATCCGTTACTATGACGAGA
CCAACATCTCTAGGAACAGTCTGGCCAAGATGTTCCACTGCTGCGCCACC
CAAATACGTAGAATCTTGGATAAGAAAAAGGATCTGCTGCAGCAGTTGGC
CACCTTAAGCGAGGCAGATGCCTCCATTATAATCGAAGAGATGACGCGCA
AGCGCCGCAAGTTCGAAATGAGTGCCATCAGCTTCCTACTACACGAGTGG
GTGGAAAGGTGCATCCAAATGCAGTTGAACATCAGCATAAGGAACCAAAA
ACTGAAGGAAACCGCCATCCGGATGGCAGCTGTGTTGAACCTGCCATCCT
TCAGACCATCCTATCGATGGCTAAGCCGATTCCGCAACAAGTACAAGTAC
GAGGCCGATGAATTGGGCTACCAGGGCGAAAATCCCTTGAACCAGGACCT
GCCTGTCGAAGACATCATTGTGGAGTTTAAGCATGCACTGCCGAACTTCA
TGCAACGGGAGCTGGATAATCCAGGCGAAGCAATCTCAAAAGCAGCTGTT
ATGGCAGATTTTGTCAATCTCTCCAGCGAAAACAGTATCATGTCCGATCA
TCCAGAGGGAGATAATGAAGTGGAGCTGGTAACATGTGAGCCCACCATGA
TGTCCTCACCATCCAGCACACCAGATGCTGCAGAGGGGGAAATACCTCTG
CAGGCACATGGCGACCAGGAAAACCCGGATGATCAGATTAACGCTGGAAC
CAGTACTCTTCTGAATGGGGTTTTTCCGCATCTAGCCATTATCCACCAGT
TCGCTCTGATGACTCGGATGTACAGGCATTGGAACTTATCTCCCAGCTGG
GAGTGCACATGCAGCACAGGCTGTTTTCTGGAGCTATCATAACTGTCGCT
GGCGACTACCGATGGAAGATGGGCAAGACGATCCAGGAGAATCGCTCTTT
CGGACTGCCAACGGGAGTATTACGCCGAATTGATGACTCGGATGATCCGG
CCAGGCCT
UFO09673.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebd2-RB | 1821 | CG12972-RB | 448..1533 | 9..1087 | 5120 | 98.7 | Plus |
| ebd2-RA | 1606 | CG12972-RA | 233..1318 | 9..1087 | 5120 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21345093..21346076 | 1054..74 | 4565 | 99.2 | Minus |
| 3L | 28110227 | 3L | 21346689..21346754 | 74..9 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:28:53 has no hits.
UFO09673.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:14 Download gff for
UFO09673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12972-RA | 225..1318 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:31:53 Download gff for
UFO09673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd2-RA | 225..1318 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:40 Download gff for
UFO09673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd2-RA | 225..1318 | 1..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:40 Download gff for
UFO09673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21345056..21346075 | 75..1087 | 98 | <- | Minus |
| 3L | 21346689..21346760 | 1..74 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:31:53 Download gff for
UFO09673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21338156..21339175 | 75..1087 | 98 | <- | Minus |
| arm_3L | 21339789..21339860 | 1..74 | 94 | | Minus |
