UFO09680.5prime Sequence
1066 bp (980 high quality bases) assembled on 2011-09-06
> UFO09680.5prime
CAGTCGACATGGCTCAAGAAAATCAAGCTGTCGACAATGGACTGCCCTGC
AACGCTTACCTGGACACAAGCCTGCGAGAGGACGAAAACATGCAACACAT
CCTGAAAACCTTTTACAGCAGCATCGAACTCCTGGAAGCCGACACGGAGA
AGGCACTGGCGCTACAGGCAGAACGCACATTGAACACAAATGAACAAATA
AAATTGGATAGCTACCTTGTGTACTTGAACAGCACACTGTTTTTCATATA
CCTGAAACTGCAGGGTGAAGATGCCTCAAATCATGCTGTGATGCACGATT
TGCGTCGTACAAGGGACCTACTTGCCCGCGATAAGAAAATAAACGATGCT
CTAGCGGCGCCAAGACTGGATATGCCCGCTGCCAAGCGATTTATCGCAGC
TGGAACCCACACACGATTTGTGGACATGAACGGAGTTATGGTCTCCGAAA
AACAATATAATAAAAGCAAGCAAGAAACTCCCAAAGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TATATTTGCCCATGGTGAAACGGGGGCGAGAGTTGTCCATATTGCCACGT
TTAAATCAAACTGTGAAACTCACCAGGATGCTGAAACGAAAACATATCTC
ATAACCCTTTAGGAATAGGCAGTTTCACGTACACCGCCCATCTGCAATAA
ATGTGTAGACTGCGAATCGTCTGCTTCATTCGAGCGATGAAACGTCAGTT
GTCCATGGACGGTACA
UFO09680.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp47-RB | 1285 | CG8928-RB | 158..636 | 7..485 | 2395 | 100 | Plus |
| Rrp47-RA | 842 | CG8928-RA | 77..555 | 7..485 | 2395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15945054..15945328 | 7..281 | 1375 | 100 | Plus |
| X | 23542271 | X | 15945397..15945600 | 282..485 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:29:37 has no hits.
UFO09680.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:44 Download gff for
UFO09680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8928-RA | 40..527 | 1..493 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:34:15 Download gff for
UFO09680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp47-RA | 73..560 | 1..493 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:02:18 Download gff for
UFO09680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp47-RA | 73..560 | 1..493 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:02:18 Download gff for
UFO09680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15945050..15945328 | 1..281 | 98 | -> | Plus |
| X | 15945397..15945600 | 282..485 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:34:15 Download gff for
UFO09680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15839083..15839361 | 1..281 | 98 | -> | Plus |
| arm_X | 15839430..15839633 | 282..485 | 100 | == | Plus |
