UFO09683.5prime Sequence
1125 bp (1018 high quality bases) assembled on 2011-09-06
> UFO09683.5prime
CAGTCGACATGGGTGCTTGTCGCCCTAGAAAATGTAGTGCAAATAACCGA
ACTATGGCAATTCGTCGCCGTAGAGCTCTAGTTAACTTGCTATTTTTGCG
CCGTCATTTGATTGGACAGGCACTTGGAATTACGAATCGGGAAACTCCAG
ACCTTAGGGTAAAATCGCGGCGACGCAATCGTAGAAGGAGAATGCAATTC
AGAGTCCGTACACCAAGTGATAATGCAATGCGCTCAGTAAGGCATCATGG
ACAGAATCCAATCAGCCCAGGATCACGGCTACAACGAAATAATCCACTTT
GGGGACACGCCGACATTATAACCACAGATAGAGCGTTGGAAGCTTTAAAT
GGACTTACTACAGGGAACAGGGAACCAAATGCATTGTCAGTAATGGTGCG
ATATACCAATGGGCGGTATTATTTAAGCTTAGAGCCAAGTGGAAATCAGC
AAAATGAGAACAATATCGTTCAAAATCCCAGTCGGAATGGTCAGAACCAA
CAGGTCGAAGACGGCAATGATCGGAATCTTCAACCGGCAGCTCAGGCAGC
TGATGATGATAACAATATGACAAATTCAAATCCGGAGGTTCCAGATGTCG
GAGGCAAATCAGAAGGATCAAGGGAATGCCCAGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATCTGACGACATGAAGCATCACAAACGGCATGATGA
ACTGAATCGCAGCGCATCAGCACTGTCGCTTGCGTATAATATTGCCATGA
TGAAACGGGGCGAAGAAGTGTCCAATGCCACGTCATCAAACTGGTGACTC
ACCAGATGCTGAAACGAAAAACTATTCCCATAACGTAGAATAGCAGTTAC
GTACGCACTGCATATTGTAACGCGA
UFO09683.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31709-RB | 1395 | CG31709-RB | 75..698 | 9..632 | 3120 | 100 | Plus |
| CG31709-RA | 960 | CG31709-RA | 75..698 | 9..632 | 3120 | 100 | Plus |
| gcm-RB | 2173 | CG12245-RB | 2107..2160 | 9..62 | 270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9579093..9579447 | 417..63 | 1775 | 100 | Minus |
| 2L | 23513712 | 2L | 9578817..9579031 | 632..418 | 1075 | 100 | Minus |
| 2L | 23513712 | 2L | 9579511..9579564 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:29:40 has no hits.
UFO09683.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:45 Download gff for
UFO09683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31709-RA | 75..698 | 9..632 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:34:18 Download gff for
UFO09683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31709-RA | 75..698 | 9..632 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:02:21 Download gff for
UFO09683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31709-RA | 75..698 | 9..632 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:02:21 Download gff for
UFO09683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9578817..9579031 | 418..632 | 100 | <- | Minus |
| 2L | 9579093..9579447 | 63..417 | 100 | <- | Minus |
| 2L | 9579511..9579564 | 9..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:34:18 Download gff for
UFO09683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9578817..9579031 | 418..632 | 100 | <- | Minus |
| arm_2L | 9579093..9579447 | 63..417 | 100 | <- | Minus |
| arm_2L | 9579511..9579564 | 9..62 | 100 | | Minus |
