UFO09684.5prime Sequence
587 bp (436 high quality bases) assembled on 2011-09-06
> UFO09684.5prime
CAGTCGACATGAGCAGCGTCGATGAAGATCTTACACCCGAGCAGATCGCC
GTGCTCCAGAAGGCGTTCAACAGCTTCGATCACCAGAAGACTGGCTCCAT
CCCCACCGAGATGGTCGCCGACATACTGCGCCTGATGGGTCAGCCCTTCG
ACAAGAAGATCCTGGAGGAACTGATCGAGGAGGTCGATGAGGACAAGTCC
GGTCGCTTGGAATTCGGCGAGTTCGTCCAGCTGGCTGCCAAGTTCATCGT
GGAGGAGGATGCGGAGGCCATGCAGAAGGAGCTGCGCGAGGCGTTCCGTT
TGTACGATAAGCAGGGCAATGGCTTTCATTTCCCACCACCTGCCCTGAAG
GAGATCCTCAAGGGAGCTGGACGGACCCAGCTGAACCGAACAGGGAGCTG
GGACATTAGGGATCGAAGGAGAATTCGGATTTCGGATGGCCTCCCGGGTA
ACAGTGGGATTTCCGAAATGAAATTCAATGGGGAGATGAAATGAACTGGG
CGAGAGCCCAGCGCTTCTCAGAGACCAATCCCGTTTTGGGGGCGGCCGGG
GCCCCAGGTTAAGTGGGTTCTTAATCCTTAATCCATA
UFO09684.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TpnC73F-RC | 1059 | CG7930-RC | 193..597 | 7..422 | 1790 | 97.1 | Plus |
| TpnC73F-RA | 962 | CG7930-RA | 96..500 | 7..422 | 1790 | 97.1 | Plus |
| TpnC47D-RB | 791 | CG9073-RB | 70..433 | 24..394 | 1095 | 87.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17047350..17047514 | 196..363 | 695 | 97 | Plus |
| 3L | 28110227 | 3L | 17046341..17046460 | 21..140 | 600 | 100 | Plus |
| 2R | 25286936 | 2R | 11274667..11274829 | 363..198 | 505 | 89.8 | Minus |
| 2R | 25286936 | 2R | 11274890..11275061 | 195..24 | 485 | 85.5 | Minus |
| 3L | 28110227 | 3L | 17046522..17046579 | 138..195 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:29:44 has no hits.
UFO09684.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:45 Download gff for
UFO09684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC73F-RA | 87..502 | 1..431 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:34:20 Download gff for
UFO09684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC73F-RA | 91..506 | 1..431 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:02:23 Download gff for
UFO09684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC73F-RA | 91..506 | 1..431 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:02:23 Download gff for
UFO09684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17046338..17046458 | 14..138 | 96 | -> | Plus |
| 3L | 17046523..17046579 | 139..195 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:34:20 Download gff for
UFO09684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17039438..17039558 | 14..138 | 96 | -> | Plus |
| arm_3L | 17039623..17039679 | 139..195 | 100 | -> | Plus |
