UFO09686.5prime Sequence
1091 bp (999 high quality bases) assembled on 2011-09-06
> UFO09686.5prime
CAGTCGACATGGGTAACAAACTGAGCTGCTCCTGTGCCCCGCTGATGCGC
AAGGCCTATCGCTATGAGGATTCGCCCTGGCAAAGTTCCCGTCGTCGCGA
TGGCCATCTATTGAGTTCGTTCAGGTTGTGGGCAGAGGTCTTCCATGTAT
CAGCGAGCGGAGCCGGCACCGTCAAATGGCAACAAGTGTCCGAGGATTTG
GTTCCTGTTAACATCACCTGCATTCAGGACTCGCCCGAGTGCATCTTTCA
CATCACCGCGTACAACAGTCAGGTGGACAAGATACTCGACGTGAGACTTG
TGCAGCCAGGCACACGCATTGGCCAGGCATCGGAGTGTTTCGTTTACTGG
AAGGATCCCATGACCAACGACACCTGGGGCCTCAACTTCACCTCGCCCAT
CGATGCCAAGCAATTCCGCGAGTGCTGTGTAAGTATTCTCTTACGGTCTG
GCAAAGCAAACATTTTCGCAGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAAACGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAAC
TGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATA
AACCCTTTAGGAAATAGGCCAGGTTTTCACCGTAACCACGCCACATCTTG
CGAATATTATGTGTGTAGAAACTGCCGAAATCGTCTGGTATTCACTCGAG
CGATGAACTCATGCTGACGAGAATCACCTCATGTCGAAGAG
UFO09686.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sif-RM | 10408 | CG34418-RM | 1086..1507 | 8..429 | 2110 | 100 | Plus |
| sif-RQ | 13469 | CG34418-RQ | 1086..1506 | 8..428 | 2105 | 100 | Plus |
| sif-RP | 14451 | CG34418-RP | 1086..1506 | 8..428 | 2105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5668689..5668885 | 114..310 | 985 | 100 | Plus |
| 3L | 28110227 | 3L | 5668962..5669124 | 308..470 | 815 | 100 | Plus |
| 3L | 28110227 | 3L | 5668034..5668141 | 8..115 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:29:50 has no hits.
UFO09686.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:47 Download gff for
UFO09686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sif-RH | 146..618 | 1..476 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:34:23 Download gff for
UFO09686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sif-RM | 1080..1507 | 1..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:02:28 Download gff for
UFO09686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sif-RM | 1080..1507 | 1..429 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:02:28 Download gff for
UFO09686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5668028..5668141 | 1..115 | 97 | -> | Plus |
| 3L | 5668691..5668884 | 116..309 | 100 | -> | Plus |
| 3L | 5668964..5669124 | 310..470 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:34:23 Download gff for
UFO09686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5661128..5661241 | 1..115 | 97 | -> | Plus |
| arm_3L | 5661791..5661984 | 116..309 | 100 | -> | Plus |
| arm_3L | 5662064..5662224 | 310..470 | 100 | == | Plus |
