UFO09701.5prime Sequence
1106 bp (977 high quality bases) assembled on 2011-09-19
> UFO09701.5prime
CAGTCGACATGAGCGCCCTGTTCAACTTCCACAGCCTGCTGTCGGTCATC
CTGCTGCTGATCTGCACCTGTGCCTACCTGCGCTCGCTCTTCCCCAGCTT
GATAGACCGCAACAAGACCGGATTCATGGGCACCTTCTGGAAGCTGGCAA
GGATTGGGGAGCGCAAGTCGCCGTGGGTAGGAGCCGCCTGCCTGATCATG
GCCTTCACCGTTCTCTTTTGGAGCGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCT
GAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCC
ATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATC
AAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCT
CAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACA
TCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACT
CCAGAGCGATGAAAACGTTTTCAGTTTGCTCATGGAAAACGGTGTAACAA
GGGTGAACACTATCCCATATCACAAGCTCACCGTCTTTCATTGCCATACG
AAATTCCGGATGAGCATTCATCAGCGGGCCAAGAATGTGAATAAAAGCCG
GATAAAACTTGTGCTTATTTTTTCTTTACGTCTTAAAAGGCCGTAATTTC
CAGCTGAACCGGTCTGTTATAAGTACATGAGCAACTGACTGAAATGCTCA
AATGTTCTTACGATGCCATTGGGGAATATTCACGTCAATCAAGTGATTTT
TTTCTC
UFO09701.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ksh-RB | 435 | CG14199-RB | 90..306 | 8..224 | 1085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:30:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19494727..19494837 | 121..11 | 555 | 100 | Minus |
| X | 23542271 | X | 19494549..19494652 | 224..121 | 520 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:30:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 793..861 | 135 | 68.1 | Plus |
UFO09701.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:31 Download gff for
UFO09701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ksh-RB | 76..301 | 8..235 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:43:49 Download gff for
UFO09701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ksh-RB | 90..315 | 8..235 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:20 Download gff for
UFO09701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ksh-RB | 90..315 | 8..235 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:20 Download gff for
UFO09701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19494549..19494651 | 122..224 | 100 | <- | Minus |
| X | 19494727..19494844 | 1..121 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:43:49 Download gff for
UFO09701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19388582..19388684 | 122..224 | 100 | <- | Minus |
| arm_X | 19388760..19388877 | 1..121 | 96 | | Minus |
