UFO09705.5prime Sequence
1158 bp (979 high quality bases) assembled on 2011-09-19
> UFO09705.5prime
CAGTCGACATGAAGCAGTTCGCATTGTTCAGCATCTTCCTTCTAATTCTG
GCTGTGGGTTTGGCACAAATGCCGCTGCAGGTGGCCGCCCAGGGCCAAAA
TGGACATTCGCAGGGACAGCCGCCAAGACCGCCAAATGGCAATGGAAACG
GCAACCAGCAGAGTGGACAAGGACAAAGCGGGCAGAACAACGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATA
TTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGA
GACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTT
CACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAA
TCGTCGTGGTATTCACTCCAGAGCGATGAAACGTTTCAGTTTGCTCATGG
AAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTC
TTTTCATTGCCATTACGAAATTCCCGGATGAGCATTCATTGGCCGGGCAA
AGAATTGTTGAATAAAGGGCCGGATAAAAACCTTGGTGCTTTATTTTTTC
TTTACGGTCTTTAAAAAGGCCGTAATAATCCAGCCTGAACCGGTCTTGGG
TTATATAGGTAACATTGAAGCCACCTGGTGTGAAATGGCCTCAAAATGTT
TCTTTACCGAATGCCCATTGGGGAATTAATCAACCGGTTGTAATATTCCA
GGTGAATTTTTTTCTTCCATTTTAGCCTTCCTTAGTTCCTGAAAAGATCC
CTTACCTT
UFO09705.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12158-RA | 279 | CG12158-RA | 16..200 | 7..191 | 925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9362653..9362782 | 191..62 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 9362835..9362891 | 63..7 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:30:24 has no hits.
UFO09705.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:34 Download gff for
UFO09705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12158-RA | 10..200 | 1..191 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:45:17 Download gff for
UFO09705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12158-RA | 10..200 | 1..191 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:26 Download gff for
UFO09705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12158-RA | 10..200 | 1..191 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:26 Download gff for
UFO09705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9362653..9362781 | 63..191 | 100 | <- | Minus |
| 2R | 9362836..9362896 | 1..62 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:45:17 Download gff for
UFO09705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5250158..5250286 | 63..191 | 100 | <- | Minus |
| arm_2R | 5250341..5250401 | 1..62 | 95 | | Minus |
