UFO09706.5prime Sequence
1118 bp (911 high quality bases) assembled on 2011-09-19
> UFO09706.5prime
CAGTCGACATGAAGGCAGTACCCAGGACGCCGATGCGTGTCGTCCCGAAA
ACTCCGCGGGTGCATCAAACGGTGGAGAAACAGCGACGAGACACCTCCGA
CAAGGCCAGGGATCCAGTGAATGTGTTCTGTCGAGTGCGGCCACTACAAT
CCGACGCAGATCTCACCTCCCTAAGGGTCAAGAACTCCACGACGATCGCA
CTGAATCCGCAGGATCAGCTGCTGCAGCATCACAAGCCACACAACGGCGC
CCAGCGCGAGGTTCAGTACATATTCAAGCACGTTTTCCAGCCGGATGCCA
CGCAGCAGGATGTGTACGCAGCTGTGGCCCAGCCGTTGGTGGAGAACCTA
CTGAAAGGCCGAAACAGTCTGCTTTTCACCTACGGCGTGACTGGAAGTGG
AAAAACGTACACCATGACCGGCAACCTGCGACACCGCGGCATCATGCCGC
GCTGCCTGGACGTGCTCTTTCGCACCATTTCAGATTACCAGGCCAAGAAG
TTCGTCTTCAAGCCGGACAAGCTTAATGGCTTCGAGATCCTGTCCGAAGA
GGATGCGCTTTTGGAGCGCCAACACGAGATGAACCAGCGTTTTGCTGGCT
CAGGACGATTTGCCTTCAGGCACAAGGACTCGGATCCGGAAATTGCATCC
CAGGCCTCCGTGGAGCCAATTCCGCTGCTGGGTTTGGATGAGGACAACAT
GTACTCGGTGTTTGTCACCTATATTGAAATTTACAATAACAGCGTCTACG
ACCTCCTTGAGGACTCGGGTATACAGAAGACTTTGCAGAGCAAAATCATT
CGTGAAGATGCCAATCGACACATGTTCGTCCACGGCGTCACAGAGGTGGA
GGTCAAGACCGTGGAGGACGCCCTCGAGGTTTTTGAAATGGGCCAGAAGC
GCAAACGAATGGGAGCACTTTTCCTCAATGCAGATCCAGTAGGAGTCCCC
TCCGTTTTCAATTATACCGCTTGGTGCAGCCGCCCACTTGAATAGCCAGG
GTGAGCGTGTGGTTTCAGACCGGCCAAAACATCCACAGTGAGTCCACCTG
TTCCTTGGTTGATTCTTGGCGGCCAAGTGAACCGATTCCTTCAAGAACAA
GAACCACGGGTGTTGCCC
UFO09706.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pav-RA | 3207 | CG1258-RA | 143..1174 | 7..1044 | 4755 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4242948..4243707 | 20..779 | 3800 | 100 | Plus |
| 3L | 28110227 | 3L | 4243765..4244010 | 779..1028 | 690 | 89.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:30:27 has no hits.
UFO09706.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:34 Download gff for
UFO09706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pav-RA | 135..1182 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:45:46 Download gff for
UFO09706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pav-RA | 137..1184 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:27 Download gff for
UFO09706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pav-RA | 137..1184 | 1..1055 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:27 Download gff for
UFO09706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4242948..4243706 | 20..778 | 100 | -> | Plus |
| 3L | 4243765..4244034 | 779..1055 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:45:46 Download gff for
UFO09706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4242948..4243706 | 20..778 | 100 | -> | Plus |
| arm_3L | 4243765..4244034 | 779..1055 | 91 | | Plus |
