UFO09707.5prime Sequence
841 bp (838 high quality bases) assembled on 2011-09-19
> UFO09707.5prime
CAGTCGACATGGGTGACAAAGACAAACTGATTTCTGATGAGCCAATCGAA
GATGCCGTTAGATCGGCATCCTCTAAAAAAATCAAAAACCAGGAACAATA
CTTACGAGGACCCTGGTATTTGGCCACTGGTTTTCTACTGTTTTGGGCAC
TCCTCTTCTCGGCCGTGGTATTACCACTCTTTTACCGCATTCCCACAGGA
TTGACCATTGAGGATGCATCCAAGGGCGTCTTTATCGCCGAACGAGCCCA
AAGCAATCTTTACAAATTAGCCGAAATCGGTACCAAAGTCGTTGGCAGTG
ATAACAATGAGAACAAAACTGTTGACTATCTGATGGGTCTAGTGAACGAG
ATACAGGAGAATTGCCTGGATGACTACTTCGACATCGAAGTCGATTTGCA
AGAGGTCTCGGGATCCTATATTCATTGGACCATGGTCAATATGTACCAGG
GCGTTCAGAATATTGTGATCAAACTGAGTCCCAAGAATACCACGAGTACC
ACTTACCTGCTCGTCAACAGTCACTTCGATTCCAAGCCGACTAGTCCATC
TGCTGGCGATGCTGGTCAGATGGTTGTTGCCATCCTGGAGGTCCTGCGAG
TGATGTGCTCAACCAAGCAAGCCATTAGGCATCCAGTCGTCTTTCTACTG
AACGGAGCCGAGGAGAATCCACTACAAGCTTCGCATGGCTTCATTACCCA
ACACAAATGGGCTAAAAACTGCAAGGTGGTTCTCAATTTGGATGCAGCTG
GCAATGGCGGTAGTGATATAGTGTTCCAAACTGGACCTAATAGCCCTTGG
CTTGTAGAAAAATACAAAGAAAATGCACCACACTATGTGTA
UFO09707.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10073-RA | 2751 | CG10073-RA | 57..884 | 9..836 | 4140 | 100 | Plus |
| CG10073-RC | 2747 | CG10073-RC | 73..880 | 29..836 | 4040 | 100 | Plus |
| CG10081-RB | 2732 | CG10081-RB | 470..829 | 433..792 | 360 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19381755..19382451 | 29..725 | 3485 | 100 | Plus |
| 2R | 25286936 | 2R | 19382511..19382595 | 725..809 | 425 | 100 | Plus |
| 2R | 25286936 | 2R | 19359536..19359845 | 416..725 | 260 | 72.3 | Plus |
| 2R | 25286936 | 2R | 19377602..19377688 | 639..725 | 240 | 85.1 | Plus |
| 2R | 25286936 | 2R | 12360234..12360330 | 629..725 | 215 | 81.4 | Plus |
| 2R | 25286936 | 2R | 12356445..12356532 | 625..712 | 185 | 80.7 | Plus |
Blast to na_te.dros performed 2014-11-26 23:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2935..2998 | 324..388 | 115 | 66.2 | Plus |
UFO09707.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:35 Download gff for
UFO09707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10073-RA | 61..891 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:46:18 Download gff for
UFO09707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10073-RA | 57..887 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:29 Download gff for
UFO09707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10073-RA | 57..887 | 9..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:29 Download gff for
UFO09707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19381676..19381696 | 9..29 | 100 | -> | Plus |
| 2R | 19381756..19382450 | 30..724 | 100 | -> | Plus |
| 2R | 19382511..19382595 | 725..809 | 100 | -> | Plus |
| 2R | 19382654..19382683 | 810..840 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:46:18 Download gff for
UFO09707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15269181..15269201 | 9..29 | 100 | -> | Plus |
| arm_2R | 15269261..15269955 | 30..724 | 100 | -> | Plus |
| arm_2R | 15270016..15270100 | 725..809 | 100 | -> | Plus |
| arm_2R | 15270159..15270188 | 810..840 | 93 | | Plus |
