UFO09714.5prime Sequence
1085 bp (1000 high quality bases) assembled on 2011-09-19
> UFO09714.5prime
CAGTCGACATGGTTCGGTGGAGCGCGCGGTCGCGGCGCCAAGCTCGCCAG
GATAAAGTGGAGCTATTGGCCAGAAACAACAAAGTGAATGGCGAGGACGA
TACCTCCGATAACGCCGCCTTTCGCAACTCGACTGACCTATCCGACCACG
ATGAGATCTTCCTCAAGGGATTGCTGCGTAGTAACTCCAACACGCCCCAC
AAGGAACTGATGCTGAATCCGACCGAGCCGCAGCCAGTGCCACTATTCCT
GCCCGCTCATCTGAACAACAAGCCCATCTGCGACGACATCATCCGCAAGT
TCTCACCCTCGAGGCGCCTGGAGTCGCGAGAACTCGCCAAGCTTCTCGCC
CAGCCGCATTTTCGTGCTCTTTTGCGCGCCCATGATGAGATAGGAGCACT
CTACGAGCAACGACTTAAAGCTGCCGGGGGATCCACCAGCCAACTAGAGA
TCGCCAGCCAACGCCAAACGGGAGGCTACCTGTTCACCGAGGACGTCCTC
AACACCAAGATGCCAGTGGAGACCATCAAGATGGTGGGTCTGCGCCGAGA
TCCCAGCAAGCCGCTGGGCCTGACCGTCGAACTGGACGAATTCAAGCAGC
TGGTCGTGGCCAGGATTCTGGCGGGCGGGGTGATCGACAAACAGAGCATG
CTGCACGTTGGCGATGTCATCCTAGAGGTGAACGGTACGCCCGTTCGCAC
TCCCGATGAGCTGCAGGTGGAGGTGTCGCGGGCCAAGGAGAATCTCACCC
TCAAGATCGGGCCGAACGTGGACGAGGAGATCAAGAGCGGTCGCTATACT
TGCTACATGCGTGCCCTTTTCACATACAATCCATCCGAAGATTCCTTGCT
GCCATGCAGGATATTGGGATTGCCCTTCAAGTCGGGCGACATTTTGCAGA
TCATCAACGTAAAGGATCCCAACTGGTGGCAGGCCAAGAACATTACTGCC
GAATCTGACAAAATTGGACTCATACCATCCCAGAGCTGAGGAGCGCGCAA
AGCTCTGCTCGAGCGACTACGCATGACACTGTACTAGCACTGACTAGTAC
TGTCGAGCTAGGTCAGTGCATGACGTACTGCACAG
UFO09714.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vari-RD | 2717 | CG9326-RD | 285..1282 | 9..1003 | 4855 | 99.4 | Plus |
vari-RE | 2535 | CG9326-RE | 285..1076 | 9..800 | 3945 | 99.9 | Plus |
vari-RB | 2610 | CG9326-RB | 285..1076 | 9..800 | 3945 | 99.9 | Plus |
vari-RE | 2535 | CG9326-RE | 1140..1345 | 801..1003 | 910 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20791230..20791664 | 800..366 | 2175 | 100 | Minus |
2L | 23513712 | 2L | 20792113..20792267 | 366..212 | 760 | 99.4 | Minus |
2L | 23513712 | 2L | 20796653..20796758 | 114..9 | 530 | 100 | Minus |
2L | 23513712 | 2L | 20796037..20796135 | 212..114 | 495 | 100 | Minus |
2L | 23513712 | 2L | 20790470..20790558 | 982..894 | 445 | 100 | Minus |
2L | 23513712 | 2L | 20790622..20790720 | 899..801 | 420 | 94.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:30:50 has no hits.
UFO09714.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:40 Download gff for
UFO09714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RD | 275..1285 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:49:18 Download gff for
UFO09714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RD | 277..1287 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:37 Download gff for
UFO09714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RD | 277..1287 | 1..1011 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:37 Download gff for
UFO09714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20796653..20796765 | 1..114 | 96 | | Minus |
2L | 20790453..20790552 | 900..998 | 97 | <- | Minus |
2L | 20790622..20790720 | 801..899 | 98 | <- | Minus |
2L | 20791230..20791664 | 366..800 | 100 | <- | Minus |
2L | 20792114..20792266 | 213..365 | 99 | <- | Minus |
2L | 20796037..20796134 | 115..212 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:49:18 Download gff for
UFO09714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20796653..20796765 | 1..114 | 96 | | Minus |
arm_2L | 20790453..20790552 | 900..998 | 97 | <- | Minus |
arm_2L | 20790622..20790720 | 801..899 | 98 | <- | Minus |
arm_2L | 20791230..20791664 | 366..800 | 100 | <- | Minus |
arm_2L | 20792114..20792266 | 213..365 | 99 | <- | Minus |
arm_2L | 20796037..20796134 | 115..212 | 100 | <- | Minus |