Clone UFO09714 Report

Search the DGRC for UFO09714

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:97
Well:14
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptvari-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO09714.5prime Sequence

1085 bp (1000 high quality bases) assembled on 2011-09-19

> UFO09714.5prime
CAGTCGACATGGTTCGGTGGAGCGCGCGGTCGCGGCGCCAAGCTCGCCAG
GATAAAGTGGAGCTATTGGCCAGAAACAACAAAGTGAATGGCGAGGACGA
TACCTCCGATAACGCCGCCTTTCGCAACTCGACTGACCTATCCGACCACG
ATGAGATCTTCCTCAAGGGATTGCTGCGTAGTAACTCCAACACGCCCCAC
AAGGAACTGATGCTGAATCCGACCGAGCCGCAGCCAGTGCCACTATTCCT
GCCCGCTCATCTGAACAACAAGCCCATCTGCGACGACATCATCCGCAAGT
TCTCACCCTCGAGGCGCCTGGAGTCGCGAGAACTCGCCAAGCTTCTCGCC
CAGCCGCATTTTCGTGCTCTTTTGCGCGCCCATGATGAGATAGGAGCACT
CTACGAGCAACGACTTAAAGCTGCCGGGGGATCCACCAGCCAACTAGAGA
TCGCCAGCCAACGCCAAACGGGAGGCTACCTGTTCACCGAGGACGTCCTC
AACACCAAGATGCCAGTGGAGACCATCAAGATGGTGGGTCTGCGCCGAGA
TCCCAGCAAGCCGCTGGGCCTGACCGTCGAACTGGACGAATTCAAGCAGC
TGGTCGTGGCCAGGATTCTGGCGGGCGGGGTGATCGACAAACAGAGCATG
CTGCACGTTGGCGATGTCATCCTAGAGGTGAACGGTACGCCCGTTCGCAC
TCCCGATGAGCTGCAGGTGGAGGTGTCGCGGGCCAAGGAGAATCTCACCC
TCAAGATCGGGCCGAACGTGGACGAGGAGATCAAGAGCGGTCGCTATACT
TGCTACATGCGTGCCCTTTTCACATACAATCCATCCGAAGATTCCTTGCT
GCCATGCAGGATATTGGGATTGCCCTTCAAGTCGGGCGACATTTTGCAGA
TCATCAACGTAAAGGATCCCAACTGGTGGCAGGCCAAGAACATTACTGCC
GAATCTGACAAAATTGGACTCATACCATCCCAGAGCTGAGGAGCGCGCAA
AGCTCTGCTCGAGCGACTACGCATGACACTGTACTAGCACTGACTAGTAC
TGTCGAGCTAGGTCAGTGCATGACGTACTGCACAG

UFO09714.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
vari-RD 2717 CG9326-RD 285..1282 9..1003 4855 99.4 Plus
vari-RE 2535 CG9326-RE 285..1076 9..800 3945 99.9 Plus
vari-RB 2610 CG9326-RB 285..1076 9..800 3945 99.9 Plus
vari-RE 2535 CG9326-RE 1140..1345 801..1003 910 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20791230..20791664 800..366 2175 100 Minus
2L 23513712 2L 20792113..20792267 366..212 760 99.4 Minus
2L 23513712 2L 20796653..20796758 114..9 530 100 Minus
2L 23513712 2L 20796037..20796135 212..114 495 100 Minus
2L 23513712 2L 20790470..20790558 982..894 445 100 Minus
2L 23513712 2L 20790622..20790720 899..801 420 94.9 Minus
Blast to na_te.dros performed on 2014-11-26 23:30:50 has no hits.

UFO09714.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:40 Download gff for UFO09714.5prime
Subject Subject Range Query Range Percent Splice Strand
vari-RD 275..1285 1..1011 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:49:18 Download gff for UFO09714.5prime
Subject Subject Range Query Range Percent Splice Strand
vari-RD 277..1287 1..1011 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:37 Download gff for UFO09714.5prime
Subject Subject Range Query Range Percent Splice Strand
vari-RD 277..1287 1..1011 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:37 Download gff for UFO09714.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20796653..20796765 1..114 96   Minus
2L 20790453..20790552 900..998 97 <- Minus
2L 20790622..20790720 801..899 98 <- Minus
2L 20791230..20791664 366..800 100 <- Minus
2L 20792114..20792266 213..365 99 <- Minus
2L 20796037..20796134 115..212 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:49:18 Download gff for UFO09714.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20796653..20796765 1..114 96   Minus
arm_2L 20790453..20790552 900..998 97 <- Minus
arm_2L 20790622..20790720 801..899 98 <- Minus
arm_2L 20791230..20791664 366..800 100 <- Minus
arm_2L 20792114..20792266 213..365 99 <- Minus
arm_2L 20796037..20796134 115..212 100 <- Minus