UFO09715.5prime Sequence
1094 bp (972 high quality bases) assembled on 2011-09-19
> UFO09715.5prime
CAGTCGACATGAGCGTTTTGCGGGAGGAAACGACAACTTCCAGCCAGAGG
GAGATAAGCACAAACGGCGGTGGGTTGGATTTCCCCGCAGAAGTGACGTC
GCTGATTGCTGGCAACAGCTTTTGCTTAACGCCAGGAAATAACGGCGGGA
TCGGTGCCCAGAAAAAGGTCACTACTGGAGCGGGTCTGAACAGTACACAG
AGAGCTACGGATGCCACCAAGCGCAAGAAACTAAGGTCGCGTAACGTACC
ACCTTCCCCATTGGCCCAAAAAACTGAAGCAGCGGCGACCTCTCTTAACC
AAACGAACATCGGTGAGGTCAAGAGAACCGATATTAACTATTCCAACGAT
CACCTTGATGCCTGGTTGGAGAGCTGTTTACGTGATGCCACCAACGCCCA
ATTGTCTTCTTCATCTGAGTTTTTGGACTTCATACCGCCCACAGCACCAG
CTCATAAGCAAATGTTTTTGACTCAACAGCAGCAGCTGCCGCAGCTTAAA
CAGCAACTACAGCAGCAGAGGCAACAGGAATTTTCGAAGCGAACCCAGCC
TTACGGAGTGGGTCCAGGCACACCGTTTAGCCTGGGGATACAGCGCAATT
CGAACTCTCTTAGCCATCGATATCCGATGCTCTTCCCACCCCAGAGCCTT
AACAGCTATGGTGATGGTGGCCAGGAGTTTGCAAGCTTGCCTCCCCTGAA
CAACATGATGGGAGGGCCGGAAGGGCTTGGGTGCGATCAGAACCGAATTC
GACGGATGTGCTGGATGGCAGCGAAAGCAATCCCAACTTTACCAAGGGAT
TTCGGTTCAGCGATCCGTGCCTACTGAACCCCTCCGATAATGACTCTAAG
CTGAGTGGCCAGAATACACCAGAGTGTCGAAATGTGAACAACAATGGTAA
GTGGCTGTGATCTGGCAACATCAAAACAATTTTTTCGCGGCTCTAATGAA
CAAATAAACATATGCACGACACCAATCAAGATCTGCGATTTGCATAATAC
AAAAGGTGGATATCGAGCTTTAAAGCACTCCCCTATAGCAGCACTGGCAA
GTGTAGCTTGGGGCATGCGACCGTAAGATAGCTAAGCGACTAAG
UFO09715.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9795-RF | 2390 | CG9795-RF | 214..1311 | 7..1088 | 4935 | 97.6 | Plus |
| CG9795-RE | 2573 | CG9795-RE | 214..1311 | 7..1088 | 4935 | 97.6 | Plus |
| CG9795-RD | 2825 | CG9795-RD | 180..1277 | 7..1088 | 4935 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4323229..4323622 | 203..596 | 1970 | 100 | Plus |
| 3R | 32079331 | 3R | 4321850..4322047 | 7..204 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 4323687..4323889 | 597..798 | 965 | 99.5 | Plus |
| 3R | 32079331 | 3R | 4323952..4324167 | 798..1008 | 700 | 94.5 | Plus |
Blast to na_te.dros performed 2014-11-26 23:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6849 | 442..529 | 181 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6869..6922 | 474..527 | 171 | 79.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6848 | 442..549 | 155 | 61.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1184 | 474..535 | 155 | 76.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2362 | 474..529 | 154 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2399 | 474..530 | 150 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6911 | 439..540 | 150 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6858 | 439..526 | 147 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2420 | 474..530 | 141 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6787 | 474..530 | 141 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6808 | 474..530 | 141 | 71.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1135 | 474..530 | 141 | 71.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3364 | 474..547 | 136 | 64.9 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 639..715 | 551..475 | 133 | 63.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2820..2870 | 474..527 | 128 | 74.1 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 672..726 | 527..473 | 122 | 69.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2374 | 474..526 | 121 | 69.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1162 | 439..527 | 118 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2763..2856 | 433..525 | 116 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2832 | 474..516 | 116 | 74.4 | Plus |
UFO09715.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:41 Download gff for
UFO09715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-RC | 202..1269 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:49:47 Download gff for
UFO09715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-RD | 175..1242 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:38 Download gff for
UFO09715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-RD | 175..1242 | 1..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:38 Download gff for
UFO09715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4321845..4322047 | 1..204 | 98 | -> | Plus |
| 3R | 4323231..4323622 | 205..596 | 100 | -> | Plus |
| 3R | 4323687..4323889 | 597..798 | 99 | -> | Plus |
| 3R | 4323953..4324166 | 799..1007 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:49:47 Download gff for
UFO09715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 147567..147769 | 1..204 | 98 | -> | Plus |
| arm_3R | 148953..149344 | 205..596 | 100 | -> | Plus |
| arm_3R | 149409..149611 | 597..798 | 99 | -> | Plus |
| arm_3R | 149675..149888 | 799..1007 | 94 | -> | Plus |
