UFO09716.5prime Sequence
1139 bp (1054 high quality bases) assembled on 2011-09-19
> UFO09716.5prime
CAGTCGACATGTTTGAGCCCTATGTGAAAATCAAGAAAAAGCGAAGTGTG
AATGAAATCTATGAAAATGAGAATTTAGAGCAACAGCAACATCATCTTCA
GCAGCAGCAGCAGCAACCTGCTACCAGCGATAATTGTTGCTGCGAGAACG
GCGAGCCTCAGAATGCGCCTGAAGTTGCAACTGCAACGGTAGCGGCAACA
TCTGTGGCAGCAACATCTGCGGCAGCAACAGTCGCCACAGGAGCAGCGGC
CAGCAGTAGCAGCAGCGGCAATTGCAGTCGCCTGCAGCAATTGATATCGA
CGCCACCAGTATTATTGCGCAGATCGTCGCTGCAACAGCAGCAGCACCAG
CAACAGCAACACCACCCACACACGCCAGCAGCAACGGCAACACCACCGCA
ACAGCAGCAACAGCAGCAAGCTGCGCCTTCGGTTTTGCAACAGCATTTGG
GTCACCTGAATTACGAAAGTGGAGCAACTGCAGCAGCAGCAGCAACAGCA
GCGGCTGCAGCAGCAACAGTAGCAACCAGTAGAAGTGGCTCGGCAACACT
GGCGCAGCATTTGGCAACACCCAGCAACATACTGCAGGCGGCATTCGGCA
GCAGCAACTTGCAACACATACTAACGCGGTCCGCCCCCTCGCCCTCGTCC
AGTGCGATTTCCTCCAACAACTGCAGCAGCGCCTGTGCGGGCAATACGCA
CTACAACGGTGGCAATAGCAACAGTGGCAGTAGCAGCAGCAACAGCAATC
ACCACAGCAACAGCATCATCGCCAGCCGCCTGTTCGGAGCCGCCTCCTCC
TCATCCTCCTCGTCCTCCTCCTCCGCATCAGCATCCTCCTCGTCGGTGGC
TGCCTCATCCTCTTCGTCGTCACACCATCTGCATAGCCATCATTCGGCGC
TGACCAACTCCATACGAATCGCATCAATCAGTCCATCAGGCGGCATCTGA
ACCAGCAGCACATCACCATCCCTCAGTGCATCTCGTCTCGCATCGGCATC
TCATCTGCATCCACATCATCATCATCCTCCTATCAGCAATCGTCGGTACA
AACAGCACATATGATGCGCATCTGGCCAGCAGCAGAGCACCACTACCATT
CACCAAGCAGCACAGCAGCAGCAGCAGCAGCAGCAGGCA
UFO09716.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RE | 4159 | CG12537-RE | 439..1580 | 9..1136 | 5220 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13981876..13982925 | 1051..9 | 4920 | 99.2 | Minus |
Blast to na_te.dros performed 2014-11-26 23:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2257..2895 | 138..782 | 470 | 57.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2999 | 79..763 | 458 | 57.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2636 | 264..629 | 364 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2831 | 77..535 | 345 | 57.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2254..2829 | 185..779 | 318 | 57.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..7197 | 79..534 | 316 | 58.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2666 | 381..760 | 287 | 58.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2658 | 473..776 | 259 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6410..6824 | 348..776 | 247 | 56.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2527 | 668..892 | 243 | 58 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..7094 | 79..423 | 237 | 56 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2568..2941 | 45..421 | 230 | 57.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2497..2972 | 79..528 | 225 | 56.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6946 | 79..252 | 208 | 63.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2505 | 665..779 | 206 | 64.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2421 | 665..776 | 200 | 64.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6535..6959 | 372..782 | 195 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2514 | 665..835 | 191 | 57.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6803 | 694..779 | 187 | 68.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2266..2484 | 666..891 | 186 | 57.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1040..1151 | 668..776 | 183 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2539 | 513..768 | 173 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6880 | 665..781 | 171 | 60.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1054..1163 | 661..770 | 171 | 64 | Plus |
TART-A | 13424 | TART-A 13424bp | 11595..11722 | 215..346 | 171 | 64.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6893 | 665..776 | 169 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6782 | 715..779 | 163 | 72.3 | Plus |
TART-A | 13424 | TART-A 13424bp | 417..544 | 215..346 | 162 | 65.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1054..1165 | 643..760 | 161 | 64.7 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3228..3350 | 125..240 | 157 | 63.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6882..7209 | 79..414 | 156 | 56.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1055..1133 | 701..779 | 152 | 65.8 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3290..3346 | 727..780 | 152 | 77.2 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 503..573 | 706..776 | 148 | 67.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2259..2532 | 685..970 | 140 | 55.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1584 | 692..779 | 139 | 66.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1042..1121 | 700..779 | 139 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6532..6569 | 727..764 | 136 | 84.2 | Plus |
X-element | 4740 | X-element ROXELEMENT 4740bp | 1712..1829 | 39..165 | 135 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6872 | 64..128 | 129 | 68.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1587 | 713..770 | 128 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1526..1587 | 700..761 | 121 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1599 | 701..765 | 115 | 66.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6764 | 731..779 | 112 | 73.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2946..2985 | 78..117 | 110 | 75 | Plus |
UFO09716.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:41 Download gff for
UFO09716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RE | 432..1486 | 3..1051 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:50:18 Download gff for
UFO09716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RE | 434..1488 | 3..1051 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:40 Download gff for
UFO09716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RE | 434..1488 | 3..1051 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:40 Download gff for
UFO09716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13981876..13982930 | 3..1051 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:50:18 Download gff for
UFO09716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9807598..9808652 | 3..1051 | 99 | | Minus |