UFO09718.5prime Sequence
1140 bp (1020 high quality bases) assembled on 2011-09-19
> UFO09718.5prime
CAGTCGACATGCTGACCAACTTCGAGTCGAAGTCGGCGAGGGTGAAGGGC
CTCTCCTTCCACCCTAAGCGCCCCTGGATCCTGGTCAGCTTGCACAGCGG
CGTCATCCAGCTGTGGGACTACCGGATGCACACGCTCCTCGAGAAGTTCG
ACGAGCACGACGGACCGGTGCGAGGCGTGGCCTTCCACCAGCAGATGCCG
CTCTTCGTCTCTGGCGGCGACGACTACAAGATCAAGGTGTGGAACTACAA
GCAACGCCGATGCATTTTTACCCTCCTGGCCCATTTGGACTATGTGCGCA
CGGTGGCTTTCCACCACGAATACCCATGGATTCTGAGCGCCTCCGACGAT
CAGACCATACGCATCTGGAACTGGCAGTCGCGCAACTGCATCTGCGTGCT
GACGGGCCACAACCACTATGTGATGTGCGCCCAGTTCCATCCCACGGAGG
ATCAGATCGTTTCTGCTTCACTCGATCAGACGGTGCGCGTGTGGGACATT
TCGGGGCTGCGTAAGAAGAACGTGGCTCCCGGGCCCGGTGGGCTTGATGA
CCACCTAAAGGGTCATCCGGGTGCCACTGATCTGTTTGGCCAAGCAGATG
CCGTGGTCAAGCACGTGCTCGAGGGCCACGACCGTGGCGTCAACTGGGCC
AGTTTCCATCCCACCCTGCCGCTGATTGTCTCCGGTGCCGATGATCGCCT
TGTGAAGTTGTGGCGCATGAACGAGTACAAGGCTTGGGAGGTCGACACCT
GTCGCGGTCACTACAACAACGTGTCCAGCGTGTTGTTCCATCCCAGGCAA
GACCTGATTCTCTCCAACGGCGAAGATCGCAGTATTCGCGTCTGGGACAT
GACCAAGCGCCAGTGCCTCTTTACATTCCGGCGGGACAACGAGCGCTTCT
GGATACTTACAGCGCATCCGACCCTGAATCTGTTTGCAGCTGGCCACGAT
GGGAGGTATGGTGGTCTTTAAACTGGAGCGAGAGCGTCTGCATATGCTGT
CCACGGGAATAATTTCTTCTACTGTCAAGGAACGTTCCTTCGCAACTGGA
CTTTACCACCACTAGACACTGGTGGTTATGCAGCTCGACAGGCAGTCGCG
GGTGTACAGCATGTCGTACACAGACTGAGCGTGTCTATCT
UFO09718.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaCOP-RA | 4078 | CG7961-RA | 242..1359 | 8..1120 | 5280 | 98.7 | Plus |
| alphaCOP-RB | 3970 | CG7961-RB | 134..1251 | 8..1120 | 5280 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1644014..1644958 | 952..8 | 4725 | 100 | Minus |
| 3L | 28110227 | 3L | 1643785..1643957 | 1120..954 | 350 | 92 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:31:06 has no hits.
UFO09718.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:42 Download gff for
UFO09718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaCop-RA | 257..1395 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:50:49 Download gff for
UFO09718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaCop-RB | 125..1263 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:42 Download gff for
UFO09718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaCOP-RB | 125..1263 | 1..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:42 Download gff for
UFO09718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1644012..1644961 | 1..955 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:50:49 Download gff for
UFO09718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1644012..1644961 | 1..955 | 99 | | Minus |
