UFO09720.5prime Sequence
1088 bp (954 high quality bases) assembled on 2011-09-19
> UFO09720.5prime
CAGTCGACATGGAGATGCAAAGCTACTCTGGTCGTGGACCATCGACAGGC
ACATCAGAAACAGCAACAGCAACAGCAGCAGTTGCATCTGCATCTGCATC
AGACACAGCAGCAACATTCACACTGCGACACTTCAATTGTCGGCTGGAAG
AGGCGGATTGGCCTGGGCCTCGCCAGCCGTTTATTGACTGCGAAGGCAGC
CACACCAACAGCACATCCTACACCCCCAGCAGCCTGCCCACCAGCAAAAA
CCTCATCGAGGGACCCAACAACACATTCCAGTGTGCACGGCAAGCTATCG
ACGAAGCGGAGCACAACGCATTCTATAGTTGCGATGGGGAAAGCCCATTG
TCTGAAAACTGCACTTTGAGGCTGAAGGCGCGACTGTTGCGATGGCCGTA
CGAGGCGTATGAGCACATTCGACTGGCAATCAACGGGGCACTCAGTGATT
ATGCTAGTGATAAACTTAGTGATAGTTCGAGCTGCGATGAAGGAGGCATG
GTGTTGCAATGTAAGCTGGGCCAGGCCCATGAACTATTGCTTTGTCATTT
GCAACAACTCGAGAGGGAGCCACTGCGGGAGGTGGGAAGCGCGGAGGAGA
GCTTCTCCAACGACAGCCTTCTGCAGGCCTTTCAAATCGAACTGGGCGCA
GAGCGCGATGGACTCTGGTCCTTCCTTAATCTAAGCGAGCTAATGGAGCC
CGATCACGGATTCCTGGGCATCATGAATGTCACCAACACTAGCTTAGACA
TGTTTTTGCCGAACCTTACAGCCCTGAACACGACCTCCACGGCCTCCACT
GCAGACATGGCCACCGAGTTCGCGGTAACAAAGAGCTTTCTGGACTACAG
TCCCCACGGCTACGATTTCCTATTCCATATTCGTGGTGTTCTTTATCTTC
GCGGGTGCCTGAGTAAAATCCTTGTGTGCCTAGCCGTTGCCTTGAACGGA
AACTGTGAATGTGACTAACTACTTCTGTTTTCCCTGCTAAAGCGATCTCT
GATCAGTTTGTTGTGATGCCCATGGGCGCGAATAACAGCTTTTTGGGGAA
TTGCCAATGCCTTTACCTGGGTGCAACATTTATGTGGA
UFO09720.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:31:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 5-HT2A-RH | 3683 | CG1056-RH | 553..1638 | 9..1086 | 4930 | 97.7 | Plus |
| 5-HT2A-RF | 3541 | CG1056-RF | 414..1499 | 9..1086 | 4930 | 97.7 | Plus |
| 5-HT2A-RD | 3178 | CG1056-RD | 553..1638 | 9..1086 | 4930 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:31:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4622580..4623625 | 9..1048 | 4605 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:31:13 has no hits.
UFO09720.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:44 Download gff for
UFO09720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5-HT2-RC | 541..1633 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:51:49 Download gff for
UFO09720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5-HT2-RF | 407..1499 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:46 Download gff for
UFO09720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5-HT2A-RD | 546..1638 | 1..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:46 Download gff for
UFO09720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4622573..4623624 | 1..1046 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:51:49 Download gff for
UFO09720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 448295..449346 | 1..1046 | 97 | -> | Plus |
