UFO09722.5prime Sequence
1153 bp (1025 high quality bases) assembled on 2011-09-19
> UFO09722.5prime
CAGTCGACATGGGGAATAGTCTGATAACGAGTGGAAAACCGAGTCAGCGC
CGTGAAAAGAGGCTTTTCGAGAGGCTGAGCTGCAGCTACGCTCAGACCCC
CAACAGAATGGAGTTGAACTTGAATCCCCTGCTGGCCATCGCCCGTTCCA
TTGCGGCGCCACCGACACCGCCTCCAACCCCGGAAAAGTTGGACTCGGAT
AAGGATAAGGAGGGTTCCTCCAAAGCCGCCATCGAACTGCTGCCTAACGA
GATGTGGCTAGAGATCATGTCCTACCTTTCGTACAATGACCTGCTGCAAT
TGCGGATGGTGTCCTGGCGGTGCCGTGATCTGGTTCATCGTCGTCGATTC
ATGGAGAAAGGGAAGGTGATAGTGACGCAACACAACCTGGAGGCGATCCA
CAAGCATGCGAAGGGCGGAAATTGCTATTTGAGCTTCGAGCGGATTGAAT
TAAGAAATCTACGCCAGTGCCGCCAGTTGGAGAACTTTCTGCGTCTTGTG
GGCCACGAAGTGAAGCATCTGCAAGTGCGCCATGCTCCTGTTTTCCGGAA
TCTGGATGGCAAGTTACCAAACCTTAAGGTTCTGACCATTGCCACGACTA
TGTCGATGGATGACCAGCATCTGGCGGCGATGGATGACCTGGATATGAAG
CAGTTTTCCCACCTTGTGGGATTCGAATGCGATGGCGTGAGTTTGGACGC
GGTGCTTAAGATGCGAATGTTGTTGCAGCTGCGACGAACGGAGAACAAAG
GTGCAACTGCGGCACCTGCAATTCGAATTCCGGCGGAACAACGAAAATGC
TCTGCTGGATGTCCTACAGGATCATGCGGAAACCTTGGTGTGCGTCAATT
TATTCTTCAGCTGCTCGCCGGGCATTGATACGCGTGAATGGTGCCGAGCG
TTCGAAAATATGCCCAATCTGCGAAAGTCTCAGCCTTTCCGGGAAATTGT
CATCCTGGTCCTGTTGAAGCTGTCCTAGAGCCGTTCCCGGAGTCAGCCAC
CAATCCGGTCAACTGGATTTGACCGGAATGTTATCGCTACCAACGAATTA
CCTGCCTCATCGTAGCCTGCAGTGGCCAAGCCACTCTGGAAGGTGCCTCG
AATTTAATGTTTTGTGTTCCAACCTTCACCGCCCAATTGCATGATGCACT
GCC
UFO09722.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12402-RC | 3476 | CG12402-RC | 506..1638 | 8..1152 | 5030 | 97.1 | Plus |
| CG12402-RB | 3476 | CG12402-RB | 506..1638 | 8..1152 | 5030 | 97.1 | Plus |
| CG12402-RA | 3476 | CG12402-RA | 506..1638 | 8..1152 | 5030 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14106482..14107435 | 1051..94 | 4245 | 98.5 | Minus |
| 3R | 32079331 | 3R | 14107729..14107816 | 95..8 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:30:40 has no hits.
UFO09722.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:38 Download gff for
UFO09722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12402-RA | 338..1380 | 1..1051 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:47:47 Download gff for
UFO09722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12402-RA | 503..1545 | 1..1051 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:32 Download gff for
UFO09722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12402-RA | 503..1545 | 1..1051 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:32 Download gff for
UFO09722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14106482..14107433 | 96..1051 | 98 | <- | Minus |
| 3R | 14107729..14107819 | 1..95 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:47:47 Download gff for
UFO09722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9932204..9933155 | 96..1051 | 98 | <- | Minus |
| arm_3R | 9933451..9933541 | 1..95 | 95 | | Minus |
