UFO09723.5prime Sequence
948 bp (834 high quality bases) assembled on 2011-09-19
> UFO09723.5prime
CAGTCGACATGGACAGCACCGAATTTCGAAAACGTGGCATGGAAATGGTG
GAGTACATCTGCAACTATCTGGAAACGCTGAACGAGCGACGGGTCACGCC
CAGCGTGGAGCCGGGATATTTGAGACACCTGTTGCCACCTGAGGCACCGC
AGGAGCCGGAGGACTGGGACCAGATCATGAGGGACGTGGAGGACAAGATC
ATGCCCGGCGTGACGCATTGGCAGCATCCTCGCTTCCACGCCTATTTTCC
GGCGGGCAACTCGTTCCCCTCTATCCTGGGCGACATGTTGGGCGACGGGA
TCGGGTGCATCGGCTTCTCCTGGGCCGCCAGTCCCGCGTGCACCGAGCTG
GAGACCATAGTGCTCGACTGGCTTGGCAAGGCCATCGGTCTGCCGGACCA
CTTTCTGGCCCTCAAGGAGGGCAGCACCGGAGGGGGAGTCATCCAGACTT
CCGCATCGGAGTGCGTACTGGTCACGATGCTTGCTGCCAGGGCACAGGCG
CTCAAGAGGCTCAAGGCCCAGCACCCGTTTGTGGAGGAGGGTCACCTGCT
GTCCAAGCTTATGGCCTACTGCTCCAAGGAGGCGCACAGCTGCGTGGAGA
AAGCGGCGATGATCTGTTTCGTGAAGCTGCGCATTCTGGAGCCCGACGAC
GACGCCAGTCTGCGCGGCCAGACGATCTACGAGGCAATGGAGGAGACGAA
CTGCAGGGTCTGGTGCCCTTCTTCGTCTCCCCACTCTGGGTACCACGGGC
TCGTGTGCGTTCGACAATCTGCCAGAGATCGGCAGCAGTTGCAGCGATTT
CCGGGCGTTTGGCTGCACGTGGATGCCGCCCTACCGCGGGCTACAGCTTC
ATCTGCCCCGAGCTGAAGGCCGCCTCTTGAAGGCCATCAGTTACGCCGAC
TCGTTCAACACCAATCCCACCAATGGCTGCCTGACGAACCTCCATGCT
UFO09723.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:30:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tdc2-RA | 2303 | CG30446-RA | 163..1092 | 9..939 | 4330 | 98.3 | Plus |
| Hdc-RD | 3733 | CG3454-RD | 920..1080 | 237..397 | 205 | 75.9 | Plus |
| Hdc-RC | 3313 | CG3454-RC | 487..647 | 237..397 | 205 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:30:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6687420..6687846 | 868..443 | 1870 | 97.9 | Minus |
| 2R | 25286936 | 2R | 6688003..6688310 | 446..139 | 1540 | 100 | Minus |
| 2R | 25286936 | 2R | 6688373..6688502 | 138..9 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 10241871..10242031 | 237..397 | 205 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:30:43 has no hits.
UFO09723.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:38 Download gff for
UFO09723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc2-RA | 151..1086 | 9..945 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:48:19 Download gff for
UFO09723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc2-RA | 163..1098 | 9..945 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:34 Download gff for
UFO09723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tdc2-RA | 163..1098 | 9..945 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:34 Download gff for
UFO09723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6688373..6688502 | 9..138 | 100 | | Minus |
| 2R | 6687408..6687842 | 447..882 | 97 | <- | Minus |
| 2R | 6688003..6688310 | 139..446 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:48:19 Download gff for
UFO09723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2575878..2576007 | 9..138 | 100 | | Minus |
| arm_2R | 2574913..2575347 | 447..882 | 97 | <- | Minus |
| arm_2R | 2575508..2575815 | 139..446 | 100 | <- | Minus |
