UFO09727.5prime Sequence
1125 bp (946 high quality bases) assembled on 2011-09-19
> UFO09727.5prime
CAGTCGACATGGATATGGAGTATATAACTAGCAGTAGTGGCAACATAACT
GCCACTACAGAAGCAGATTTCAGTTCATCTTTGGGCGAATCCAATGTCAC
GGAATACAATACAACGGAAATGGACGCGAATGAATCAGCTGGCGAGGATG
AGGAGATGCTAAGGATAGCCTTTTTTATAGGGCACTTCGTGCATCAATAC
TATATACCAGTGCTTTGCTGCACGGGCAGCATTGGCAATATCCTCTCCGT
GTTTGTCTTCTTTAGGACCAAGTTGAGAAAGTTGTCCTCCAGCTTTTACC
TGGCCGCTCTCGCAGTGAGCGACACCTGCTTCCTGGCCGGACTCTTCGCA
CAGTGGCTGAACTTCCTCAATGTGGATATCTATAATCAAAACTACTTTTG
CCAGTTCTTCACGTTCTTCAGCTACCTGGCCAGCTTCTGCTCCGTCTGGT
TTGTGGTGGCCTTCACCGTGGAGCGCTTCATTGCCGTCATCTATCCACTG
AAGCGCCAGACCATGTGCACCGTGCGCCGGGCCAAGATCGTCCTGTTTTG
TTTGACACTCGTGGGATGTCTGCACTGTCTGCCCTATATAGTCATTGCCA
AGCCGGTGTTTATGCCCAAATTGAACACGACCATTTGCGATCTCAACTCG
GAATACAAAGAACAACTGGCCCTCTTCAACTACTGGGACACCATAGTTGT
CTATGCGGTGCCCTTCACCACCATCGCCGTTCTGAACACCTGTACAGGTT
GTACGGTGTGGAAGTTCGCCACCGTTCGCCGAACGCTGACCATGCACAAG
ATGAAGCCCCAAACGAACAGCATGCCATCGAACTCGTCGAACTCATCGGG
CGGAGCCTCATCTGCAGTGGCCTCGTACCGCCTATCGGCATCGCTGAAGC
GCCAGAAGTCGACCGGAACCGCACCAAGTGACAGCATATGGTGGCCAACA
GCCAGAACGGATGATCAGGAGCAGCAACCAGCAGTCGCCAGCCAGCATCA
AATTAAACATTGCCAAGCCTTTGCGAAGAATACCGCAAAAACCAGCCGTC
CGCAAGGTGGCAAACTCATCGCAGCCTCAGGTAACCAAAATGGCTGCCTA
AGTGCTCGACGTCTGTTTGCCCTCA
UFO09727.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CNMaR-RA | 2704 | CG33696-RA | 727..1825 | 8..1111 | 4915 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:31:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9644835..9645487 | 8..660 | 3265 | 100 | Plus |
| 3L | 28110227 | 3L | 9650344..9650487 | 660..803 | 720 | 100 | Plus |
| 3L | 28110227 | 3L | 9650980..9651155 | 803..978 | 665 | 94.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:31:30 has no hits.
UFO09727.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:48 Download gff for
UFO09727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33696-RA | 720..1697 | 1..978 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:54:20 Download gff for
UFO09727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33696-RA | 720..1697 | 1..978 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:57 Download gff for
UFO09727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CNMaR-RA | 720..1697 | 1..978 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:57 Download gff for
UFO09727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9650980..9651218 | 803..1045 | 91 | -> | Plus |
| 3L | 9644828..9645486 | 1..659 | 99 | -> | Plus |
| 3L | 9650344..9650486 | 660..802 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:54:20 Download gff for
UFO09727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9637928..9638586 | 1..659 | 99 | -> | Plus |
| arm_3L | 9643444..9643586 | 660..802 | 100 | -> | Plus |
| arm_3L | 9644080..9644318 | 803..1045 | 91 | -> | Plus |
