UFO09732.5prime Sequence
1132 bp (981 high quality bases) assembled on 2011-09-19
> UFO09732.5prime
CAGTCGACATGGATAGAAATCCCGTGAGGCAGTCGACGTCATCCGGCACC
GTAGAAGGTGAATCCAGCGAACAGGAGGAGCAGAAGACGCCCAGTGCGGC
CGAATATATGAGGAACTTCAAGAACATCATAGCGCCGGGCAACGAGGCCT
CCATGACCAGGGAGTTCAATCCGCAGGTGGCATACGAATTCGAAAAGTAT
CTCAATCCGCAAAAGCTCAAGCAGCACGTCCTTAGGAGCGAGAAGCTGCG
ATCCATTCTGGAGCACTATGCCAAGGAGTCGGGCACGCCGCTCAAGCAGA
TGGAGCGTCAGGCCCGGGCGATCATTGATGAAATCGGCCTCGATCGGAAT
ATGGCCATCATCCGGTGGTGCGGCATTGCCATTACGGCGATCGGCAAGCG
GATCTGCGATGGATTCTATGTCAATTCGGCTAGCATGGCCAATGTGCGCA
AGGATATGGGCAAGTGCCCGGTGCTCTATCTGCCAAGTCATCGCAGCTAC
ATGGACTTCATCCTGATGTCCTACATCTGCTATTACTACGACATCGAGAT
ACCAGGAATAGCAGCCGGCATGGATTTCCACTCCATGTTCGGAATGGGCA
CCATGTTGAGGAAAACAGGAGCGTTCTTCATGCGCCGCAGCTTCTCCAAC
GATGAGCTATACTGGGATATTTTCCGGGAGTATATGTACGCGCTGGTGGC
AAACTACCACATCGGCGTGGAGTTCTTCATTGAGGGCACGCGCTCCAGGA
ATTTCAAAGCTCTGGTTCCCAAAATTGGACTACTCTCGATGGCTCTGTTG
CCATATTTCACGGGCGAAGTGCCGGATGTGATGATTGTGCCAGTGAGTGT
GGCCTACGAACGCGTCCTGAAGAGCTACTTGTTTCGTTGATGAGCTGCTG
GGGTTGTGCCCAAGCCCAAAGAAGTCGACCAAAGGGCTTTTTCAAGGCCC
TAAAAATCATTAGACGAGCGATTTGGCCAAGAATTGTTCCCTCGACTTCG
GAAGAGCCCATTCCTCGGTGCAAGAAGTTTTTCCGGACCCGACAGCCGCC
GCCAAGCGAATGCACGAGCAGGCGTTGGTTGTCACTTGCCAAAGCTGAAA
CCGCCAGGAGGTGGAAACTTAGTCCAAACGCT
UFO09732.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhap-at-RC | 3516 | CG4625-RC | 356..1444 | 9..1116 | 4835 | 96.8 | Plus |
| Dhap-at-RB | 3441 | CG4625-RB | 281..1369 | 9..1116 | 4835 | 96.8 | Plus |
| Dhap-at-RA | 3516 | CG4625-RA | 356..1444 | 9..1116 | 4835 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:31:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25488524..25489088 | 573..9 | 2825 | 100 | Minus |
| 3R | 32079331 | 3R | 25487748..25488272 | 1116..573 | 1600 | 92.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:31:40 has no hits.
UFO09732.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:50 Download gff for
UFO09732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhap-at-RA | 1..984 | 9..1002 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:55:45 Download gff for
UFO09732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhap-at-RA | 349..1339 | 1..1002 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:00 Download gff for
UFO09732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhap-at-RA | 349..1339 | 1..1002 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:00 Download gff for
UFO09732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25487853..25488271 | 574..1002 | 95 | <- | Minus |
| 3R | 25488524..25489095 | 1..573 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:55:45 Download gff for
UFO09732.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21313575..21313993 | 574..1002 | 95 | <- | Minus |
| arm_3R | 21314246..21314817 | 1..573 | 99 | | Minus |
