UFO09734.5prime Sequence
1062 bp (917 high quality bases) assembled on 2011-09-19
> UFO09734.5prime
CAGTCGACATGACTCTGCCTTGCCGCTGTTGTTGTTGTTCCGGCAAAGTG
ACAATCTTTCAATATTCAGCGAAAATGGTATCCGGTCGTCCTCTACTCTA
CCTCTCACTGCCCGGTGTAGCATTTATACTCGGCGTCTTTTGGTTTCGGC
GTAGATATAAAAATTGTTTAGACAAGCCCGACGACGAGGACTCATCGGCC
ATCAATGACTCGTCGATTGAACCAACTGTGCAGGCGCGCAAGGCCAACGG
AGTCCTGCAGAATGGCAAGCTGCCACAGCAGTCGGCCAGCAAGTCGATGA
ACATCAACGGAACTTTAGTTAACGGTAGCGGAAGCGGTAGCGGAAGTAGC
AGTGATGAGAAGGACAGCCCCACTACCATGTTGTATGGTAAATCAGCACC
AATCAAAATCCAGAGCAATGGACGCACTTCAAATGGCAAGCATCAGCAGC
AGATCGATTCCGAAATACTGAAGTCAAAGATACAGGATGCCGAACACAAG
ACACTCTGCTCCATAGACGAGGATTTCGAGAATCTATCGTCGCCACGTGA
TTTACCCGATTCGGTAAATACACGCGTATCCTTCTACAATCGTAAGGCTA
CCCAAAAGACGGTGGAACCGGTGGTGATTAAGGCCACGCGCACACCCAAA
ATATCGCCAGAGAACTCCTTCCTGGATACCAACTACACCAACAAAGGAGT
GCGAGCAGAACAACAACTGTGAGCCCAAAGGAGGAGCCCTCCAAGAAGAG
GCCGATCAGGAGGAGCTCGAGCAGGATCAGGAGCAGACGGTGCTGAAAGG
AGGAAGTGGTGGATAGCAATGGTTATCAGAAGCGCAATGTGATGCGGCCA
GTCCATCGCTGAGCATTTGCAGTGTGCAATCGGCGATCCTGGCAAGGATC
CAGCTTGCCCGCGCTCGAGGCTCCCCGCGTGAAACCACCTTACGAGTTCC
TCTTCCCGATCAGCTTGATTGGTCACCCTGTACCGCCGCAGCGGCGTTTA
TTACCAAATCAGCCAGACCTGCCAGCGTTTCTGTAGCAGATCCGTACTCG
CTAGTTGCGCCA
UFO09734.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:31:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spoon-RC | 4509 | CG3249-RC | 99..1134 | 9..1036 | 4615 | 97.4 | Plus |
| spoon-RD | 3668 | CG3249-RD | 743..1734 | 53..1036 | 4395 | 97.3 | Plus |
| spoon-RA | 3341 | CG3249-RA | 417..1407 | 54..1036 | 4390 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5416450..5417374 | 977..54 | 4060 | 98.1 | Minus |
| X | 23542271 | X | 5420194..5420238 | 53..9 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:31:16 has no hits.
UFO09734.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:44 Download gff for
UFO09734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yu-RC | 93..1115 | 1..1019 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:52:19 Download gff for
UFO09734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spoon-RC | 93..1115 | 1..1019 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:48 Download gff for
UFO09734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spoon-RC | 93..1115 | 1..1019 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:48 Download gff for
UFO09734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5416431..5417374 | 54..996 | 97 | <- | Minus |
| X | 5420194..5420243 | 1..53 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:52:19 Download gff for
UFO09734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5310464..5311407 | 54..996 | 97 | <- | Minus |
| arm_X | 5314227..5314276 | 1..53 | 92 | | Minus |
