UFO09735.5prime Sequence
1114 bp (1012 high quality bases) assembled on 2011-09-19
> UFO09735.5prime
CAGTCGACATGAGTCAACAGGCGAAAAACGAAAACATCTACGCAACTCTG
CCGCGCACCCAACGCGGCCAACCCATCGTTTTGGGTGCCGATCCCAAGGG
CAAGAACTTCCTGTACACCAATGGAAACTCTGTGATCATCCGGAACATCG
AGAATCCAGCCATTGCCGATGTCTACACGGAGCACTCGTGTGCAGTGAAC
GTGGCCAAGTACTCGCCCAGCGGATTTTATATTGCATCTGGTGACGCCTC
CGGCAAGATTCGCATTTGGGACACGGTCAACAAGGAGCACCTGCTTAAAA
ATGAGTTCCAGCCCATTGCAGGACCCATCAAGGATATTAGCTGGTCGCCA
GACAATCAGCGCATCGTTGCCGTGGGTGAAGGACGCGAACGTTTCGGTCA
TGTCTTTATGTCTGAAACCGGCACGTCTGTGGGCGAGATCAGTGGCCAGT
CCAAGTCTATTAACTCGGCGGACTTCCGGCCAGCCAGGCCATTCCGCATT
GTTACGGGCAGCGAAGACAATACTATCGCCGTGTTCGAGGGACCCCCGTT
CAAGTTCAAGATGACCAAGCAGGATCACTCTCGCTTCGTCCAGGCTGTGC
GCTACTCGCCCGATGGCAAATTCTTCGCCTCCGCCGGCTTTGATGGCAAA
GTCTTTCTGTACGATGGCACCAGCTCTGAACTGGTGGGCGAATTTGGATC
TCCTGCCCACAAGGGCGGCGTTTACGCATTGGCCTGTAAACCAGACAGCA
CCCAACTGCTAACCTGCTCCGGCGACAAGACGTGCCGCCTTTGGACAGTG
GAGTCGCGCGAGCTGGTTAGCGAGTTTGTGATGGGCACCACTGTGGACGA
CCAGCAGTGTCCTGCTTGTGGCAAGGAGACAACCTAATCACGTCTCGCTT
TCGGGCGTGATCACCTACCTCAATGTGCGGATCCCTCGAACGCTGCGTGT
GTGAAGGGCACAATAAGCCATCACGTGCTGGGACTGACGATGACCGCAGC
ACCATATACACGGTAGTCACGATGGCGTGGTGACAACTGGTCCTCGGGCA
GCGGCACACGATCGCATCAGGGCACTGAAACGAACAATCACGCATGGCGC
TGGGTACTTGTCTA
UFO09735.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flr-RB | 2210 | CG10724-RB | 47..1130 | 9..1077 | 5005 | 98.2 | Plus |
| flr-RA | 2275 | CG10724-RA | 128..1195 | 25..1077 | 4910 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13414660..13415241 | 502..1069 | 2205 | 96.7 | Plus |
| 3L | 28110227 | 3L | 13414336..13414601 | 243..508 | 1330 | 100 | Plus |
| 3L | 28110227 | 3L | 13413316..13413438 | 30..152 | 615 | 100 | Plus |
| 3L | 28110227 | 3L | 13414056..13414148 | 151..243 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:31:20 has no hits.
UFO09735.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:45 Download gff for
UFO09735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flr-RB | 41..1140 | 2..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:52:52 Download gff for
UFO09735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flr-RB | 41..1140 | 2..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:51 Download gff for
UFO09735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flr-RB | 41..1140 | 2..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:51 Download gff for
UFO09735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13413317..13413438 | 31..152 | 100 | -> | Plus |
| 3L | 13414058..13414148 | 153..243 | 100 | -> | Plus |
| 3L | 13414337..13414600 | 244..507 | 100 | -> | Plus |
| 3L | 13414666..13415260 | 508..1087 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:52:52 Download gff for
UFO09735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13406417..13406538 | 31..152 | 100 | -> | Plus |
| arm_3L | 13407158..13407248 | 153..243 | 100 | -> | Plus |
| arm_3L | 13407437..13407700 | 244..507 | 100 | -> | Plus |
| arm_3L | 13407766..13408360 | 508..1087 | 96 | | Plus |
