UFO09736.5prime Sequence
1083 bp (978 high quality bases) assembled on 2011-09-19
> UFO09736.5prime
CAGTCGACATGGCAACTGTGGCGCCCGCTGTAAAAGCCGCGAGCAAGGTG
CTCCAGAATCTGGGATTCCGGCTGCCCAAACAGATTAAGCCAAGCAAGTA
CCGCCTTCATTTGCGCCCCGATCTCGAACGAAAGAACTATTCCGGCAATA
TAAGCATCAGCCTGCAAGTACTGGAGCCCATAGCCTTCATCCCAGTCCAT
GTGAAGCAACTGAATGTGAGCACCGTTGAGGTGAAGCGCCTGGATGAATC
TGGAGCGCCGCTTAAGGACATCACCCCCACGCTGACCTTTGCCCATCCGG
AGTTTGAGTACTGGGTGACCGAGTTCGAACAGCCGCTGGAGGCGGGAAAC
TACTCACTGCTGCTCAACTTTACGGGATCGCTTGTAGATCGGATTACGGG
GATGTACCAGAGCTCCTACTTGGATAAGCTGAAAAACCGCTCCAGATCAA
TCATTTCCACAAAGTTTGAGCCCACTTATGCCCGCCAAGCATTCCCCTGC
TTCGATGAGCCCGCCCTTAAGGCTCAGTTCACCATAACGGTGGCCCGTCC
AAGTGGTGATGAGTACCATGTGCTGTCCAACATGCCAGTGGCCAGCGAGT
ATGTCGATGGCGATATCACCGAGGTGACTTTCGCGGAGACCGTACCCATG
AGCACCTATCTGGCCGCCTTTGTGGTGTCTGATTTTCAATACAAGGAAAC
CACTGTGGAGGGAACCAGCATCGCTCTGAAAGTCTATGCGCCACCAGCGC
AGGTGGAGAAAACCCAGTACGCCCTGGACACTGCGGCCGGAGTGATGGCC
TACTACATCAACTATTTCATGTTTCGTATGCCCTACCCAAATTGGATCTG
GTTGCCATACCCGATTTCGTGTCCGGTGCTATGGAAAACTGGGGATTGGT
CACGTTCCCGGGAGACCGCTCTTCTGTACGACGATCTACCAGTTCCAGCG
TGAATAAGCAGCGTGTTGACCATCGTCGTGACCCATGTGTTGGCCTCACC
CAGTGGATCGGAACCTATAACATGACCTGTTGACGAATTTGTTGCTAACG
TAGGCTCGCCATCATCCCTGAATCACAGGAGTT
UFO09736.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32473-RB | 3002 | CG32473-RB | 134..1136 | 9..1013 | 4810 | 98.9 | Plus |
| CG32473-RC | 3635 | CG32473-RC | 767..1769 | 9..1013 | 4810 | 98.9 | Plus |
| CG32473-RA | 3273 | CG32473-RA | 840..1407 | 444..1013 | 2635 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13310143..13310694 | 443..994 | 2510 | 98.6 | Plus |
| 3R | 32079331 | 3R | 13309519..13309955 | 9..445 | 2185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:31:24 has no hits.
UFO09736.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:46 Download gff for
UFO09736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RB | 130..1140 | 1..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:53:21 Download gff for
UFO09736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RC | 763..1773 | 1..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:53 Download gff for
UFO09736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RC | 763..1773 | 1..1016 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:53 Download gff for
UFO09736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13309515..13309955 | 1..445 | 99 | -> | Plus |
| 3R | 13310146..13310715 | 446..1016 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:53:21 Download gff for
UFO09736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9135237..9135677 | 1..445 | 99 | -> | Plus |
| arm_3R | 9135868..9136437 | 446..1016 | 97 | | Plus |
