UFO09739.5prime Sequence
1107 bp (975 high quality bases) assembled on 2011-09-19
> UFO09739.5prime
CAGTCGACATGAGTCAAAATGTGGCCGACAGTTTGCCCACGTGGCGCCTT
TGGGGCGAAGAGCACGAGAAGAATGCAATTTTCACCGTTTACCTGAAGAA
AGTGCGATACCACCGACCGACGCCCACAGCCAGCAATGACTCAGATGATG
AGATTTCCCATCTGGAGTGGGAGACTGTACGCGTGCGTTTCGTTAAGGCG
GCTACATTGGCTCGATTGGTGGAGGCGTTAGCCACCGACGACGGCGAGCT
GGAGTCCACCTTCATCAACGTGTTCCTGTCCACATATCGCACCTTCTCCA
CACCCAAGCAGGTGCTCAGTCTGCTGACGCAACGGTACGATGCTCTGCAT
GAGAAGCACCTGGAGGAGTTGGAGCAGGCACAGCAAAATGGACAGGTCAT
GGATCCCGCCTACGATCCACACGCCTCCATTCACGAGCAGCACAAGAAAA
CCCTAGTCTCAGCGCTGCACGTCTGGCTGGATGGATTCCCGGAGGATTGG
CACGAGGATAACCTGCAACAGATCTTGGCATTTGCCACCAAGCGGCTGAA
ACGATCCGATCTGCACATCAAGGTGCTGAATCGTCTGGAACGGCTCATCA
AACAGTCTCTCTATGGAAATGGAGGAGGAAGCGGTGGCTCGGAGAACAAT
GGTCATTCGTGGCTTTCCGCAGCGCGCTCACAACAGATGCAGCAATTCAT
GATTCCCACTCACTATGGCTCTTCGTATGACCTCACGGATCAGTTCAATG
GCATGTACCTCTCGCCAATGGGCCACGGGCCCATCTATCGTGGACCTACC
CACTTTCTGCAGGCATTCCGTTTTCCGCATGTGCCCGTCCGGCATTTTGC
TGAGCAGTTGACCCGTATGGATACAGAACTCTTTAAGCGACTGATTCCCC
ACCAGTGCCTCGGACACACGTGGGCACGACGTGATAAGTGGAGGATCCGA
GAACTGTGGTGGCCACCATCAACCAGTTTAATGCATGCTCTCCGGTGGTG
TCCAGTATCCTGATCGATCGCTGAACCCTCAGAGCCGCGCCTCTGGACAT
TTCACGATGATGATATTGCCAAGAGTGGCATTGCTCTAGAACCTTAGTTC
GCTCAAG
UFO09739.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rgl-RC | 3754 | CG8865-RC | 503..1606 | 9..1107 | 5080 | 98.1 | Plus |
| Rgl-RD | 3865 | CG8865-RD | 614..1717 | 9..1107 | 5080 | 98.1 | Plus |
| Rgl-RB | 3939 | CG8865-RB | 688..1791 | 9..1107 | 5080 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:32:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13909268..13909772 | 1021..518 | 2290 | 98.6 | Minus |
| 3L | 28110227 | 3L | 13909832..13910215 | 521..138 | 1920 | 100 | Minus |
| 3L | 28110227 | 3L | 13910483..13910586 | 138..35 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:32:01 has no hits.
UFO09739.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:54 Download gff for
UFO09739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgl-RC | 494..1606 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:58:48 Download gff for
UFO09739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgl-RB | 679..1791 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:10 Download gff for
UFO09739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rgl-RB | 679..1791 | 1..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:10 Download gff for
UFO09739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13909256..13909768 | 522..1032 | 98 | <- | Minus |
| 3L | 13909832..13910215 | 138..521 | 100 | <- | Minus |
| 3L | 13910484..13910585 | 36..137 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:58:48 Download gff for
UFO09739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13903584..13903685 | 36..137 | 100 | <- | Minus |
| arm_3L | 13902356..13902868 | 522..1032 | 98 | <- | Minus |
| arm_3L | 13902932..13903315 | 138..521 | 100 | <- | Minus |
