UFO09740.5prime Sequence
1034 bp (935 high quality bases) assembled on 2011-09-19
> UFO09740.5prime
CAGTCGACATGTGCACTGAGGTGAATTCCGCGATGGGTCTTCAAGCAACA
GCCGCCACCAAGCGGAAGCATGAGCTGACCTTCGACAGCAAGGATGCCAA
CACCACCTACACGGGCAACTGTGCCCCGCCCCCCGTCAAGGCCAACAAGT
GGGCCATCAGCAACAACAACTACCTGGAGTCGCTCGAGGAGCAGCAGCAG
CAACAGCAATCGCCATCGGAGCCAGCTGTTGAGTCCAACAACAACCACAT
TGTTTTAGAAGCATCAATGGATGCGTTGAAGCCAACGGAGCCAAGTATTA
GCAATGGTCATGAAGTTACTACCGCCGTCGCAGCAATGAAAAGTCAAGCG
GAGGTGCCACTCCCGCCAACAGCGAGTGCGGCGATACCGGAGGACAGTAT
CGCCAGGTTAGAGGTGGTCACCTCAGCCGTTCCTTGTGAGCCCTGGACGA
GCAATGGGCCCACTACTCCTTCCGCGGTGGCAGGACCCGCAGCATCCGCG
GAACCTGTGGATTGCATCTCCAAGCTGCAGGCCGTCGCGGTGCCCAGTGA
TCCTTGGGGTAGCATTGCCACCCGCTCCACTCTGGCAACGACTTTGCTCA
GTGCCGATGAGCTGGACGACGATGATGATGATTTTGAGGACGACTACGAG
GAGGAGGAGAGCATCATACCCACCTACTGTCCCATGCGCTATCATCCCTT
TGTACCGCATCCGCACCCTCATTCGCACCAGCTGCCGTCCCATCCCCACC
AGCAGCAGCCGCAGCAGCTCTCCCAACAACAACCACATCCCCAGCAGCAG
CAACTCGCCCAGCAGCAGCAACAACATCCGCAGCAGCAGCGAAGCTATGC
CCCCGGATATGGGAGCAGGCAACCCAACTACTATTCGGAGCCTTTCCCGC
AGCAGATGCTCGCGACAGGAGACATGTCACAGTCCTGAGACACGATACAG
TCGCATGATAGAGCAGCCATCGCTAGACTGATACATATGACTATGAGGCA
GCGTCACATGACCACGGGAAATGACCGTGTGTAG
UFO09740.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tara-RB | 4066 | CG6889-RB | 503..1418 | 9..921 | 4515 | 99.7 | Plus |
| tara-RA | 4341 | CG6889-RA | 790..1693 | 21..921 | 4455 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:32:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16256776..16257663 | 19..906 | 4440 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2431 | 142..249 | 160 | 64.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1086..1123 | 187..224 | 109 | 76.3 | Plus |
UFO09740.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:55 Download gff for
UFO09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tara-RB | 491..1415 | 1..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:59:21 Download gff for
UFO09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tara-RB | 491..1415 | 1..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:13 Download gff for
UFO09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tara-RB | 494..1418 | 1..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:13 Download gff for
UFO09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16256776..16257681 | 19..921 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:59:21 Download gff for
UFO09740.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12082498..12083403 | 19..921 | 99 | | Plus |
