UFO09742.5prime Sequence
1102 bp (1003 high quality bases) assembled on 2011-09-19
> UFO09742.5prime
CAGTCGACATGTTTACCCGATGTGCCAATTCGCTTGGCCTCTACCATAAT
AATATTAACAATAACAACAGCGCTTGCTGTGCCGCTTCCCCGAAAAGAAG
CTGCCTTCCGAGTGTGGAAAAGCCTGAAGATGCGTGCCTACAGGTGGCGA
CGAATGTGACCGAGCAAAAGCACCATGTCACCAGGGAGACGCGCGGCAAG
AATTTGGGACTCTGTCGAGGATTCCGAGGATGCACGGTGTGGCTGACTGG
CCTCAGTGGAGCTGGAAAGACCTCGATTGCCTTCGAACTGGAGGCGTACC
TGGTATCCCGGGGCATTCCGGCCTACGGGTTGGACGGCGACAACATTCGC
ACCGGACTGAACAAGAACCTGGGCTTCACGCCCGCCGATCGCGAGGAAAA
CATTCGCCGCGTGGGCGAGGTGGCCAAGTTGTTTGCCGACAGCGGAGTGG
TGGCCATCTGCAGCTTCGTTTCGCCCTTCGCCGACGATCGTGAGATGGCG
CGCAAGATCCACAAGGATGCGGGTCTGAAGTTCTATGAGATATTCGTGGA
CACACCGCTGGATGTGTGCGAAACCCGGGACGTGAAGGGTCTATACAAGA
AGGCGCGCGAGGGCGTAATCAAAGGATTCACGGGCATTACGCAGGAGTAC
GAGCGACCCCAGATGCCGGAGCTGGTGGTCAACACGCACGGCTACACGGT
GCGCGAGTCCACTCAGAAGCTGGTGACGCTGCTCGAACAGGAGGGCATTA
TTCCGCGCTCGCTGCGCGACGTAGACCTGCTGCCGGAGCTTTATCCCAGC
GAATCCATTGCCACGGAGGCACTGCGTCACGAGGCCGAGTCGCTGCAAGC
CATCGAAATCAGCACCGTGGAGCTGCAGTGGGTGCAAGTACTGGCCGAGG
GATGGGCATATCCACTGCGCGGCTTCATGCGCGAGGATGAGTACTGCAGA
CGCTGCACTTCAACACACTTCAGAGCGGCATGACGGTCCTATCGCGAGAA
CCACCTCGGTGCCCATTGTTTGAAGCACGCAAGGCGGACAAGATCGGTCT
GACGCTGCTCCCTCGCTGACTCCTCAATACAAGCCAGCCGTAGCATTCCG
GC
UFO09742.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:32:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Papss-RD | 2457 | CG8363-RD | 170..1238 | 9..1072 | 5030 | 98.6 | Plus |
| Papss-RG | 2432 | CG8363-RG | 269..1213 | 133..1072 | 4410 | 98.4 | Plus |
| Papss-RB | 2394 | CG8363-RB | 231..1175 | 133..1072 | 4410 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:32:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19858814..19859588 | 249..1021 | 3680 | 99.5 | Plus |
| 3L | 28110227 | 3L | 19847478..19847603 | 9..134 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 19858377..19858493 | 134..250 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:32:13 has no hits.
UFO09742.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:56 Download gff for
UFO09742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RD | 168..1251 | 9..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:00:20 Download gff for
UFO09742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RD | 170..1253 | 9..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:15 Download gff for
UFO09742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RD | 170..1253 | 9..1086 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:15 Download gff for
UFO09742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19847478..19847603 | 9..134 | 100 | -> | Plus |
| 3L | 19858378..19858492 | 135..249 | 100 | -> | Plus |
| 3L | 19858815..19859610 | 250..1041 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:00:20 Download gff for
UFO09742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19840578..19840703 | 9..134 | 100 | -> | Plus |
| arm_3L | 19851478..19851592 | 135..249 | 100 | -> | Plus |
| arm_3L | 19851915..19852710 | 250..1041 | 98 | -> | Plus |
