UFO09743.5prime Sequence
1102 bp (1007 high quality bases) assembled on 2011-09-19
> UFO09743.5prime
CAGTCGACATGCCGAATCCGCCAATTGGATTTTATCCCCATATCAAAAGA
AGGTGCCTACAGGTGGCGACGAATGTGACCGAGCAAAAGCACCATGTCAC
CAGGGAGACGCGCGGCAAGAATTTGGGACTCTGTCGAGGATTCCGAGGAT
GCACGGTGTGGCTGACTGGCCTCAGTGGAGCTGGAAAGACCTCGATTGCC
TTCGAACTGGAGGCGTACCTGGTATCCCGGGGCATTCCGGCCTACGGGTT
GGACGGCGACAACATTCGCACCGGACTGAACAAGAACCTGGGCTTCACGC
CCGCCGATCGCGAGGAAAACATTCGCCGCGTGGGCGAGGTGGCCAAGTTG
TTTGCCGACAGCGGAGTGGTGGCCATCTGCAGCTTCGTTTCGCCCTTCGC
CGACGATCGTGAGATGGCGCGCAAGATCCACAAGGATGCGGGTCTGAAGT
TCTATGAGATATTCGTGGACACACCGCTGGATGTGTGCGAAACCCGGGAC
GTGAAGGGTCTATACAAGAAGGCGCGCGAGGGCGTAATCAAAGGATTCAC
GGGCATTACGCAGGAGTACGAGCGACCCCAGATGCCGGAGCTGGTGGTCA
ACACGCACGGCTACACGGTGCGCGAGTCCACTCAGAAGCTGGTGACGCTG
CTCGAACAGGAGGGCATTATTCCACGCTCGCTGCGCGACGTAGACCTGCT
GCCGGAGCTTTATCCCAGCGAATCCATTGCCACGGAGGCACTGCGTCACG
AGGCCGAGTCGCTGCAAGCCATCGAAATCAGCACCGTGGAGCTGCAGTGG
GTGCAAGTACTGGCCGAGGGATGGGCATATCCACTGCGCGGCTTCATGCG
CGAGGATGAGTACCTGCAGACGCTGCACTTCACACACTTCAGAGCGGATG
GACGGTTCCTATCGCGAGAACCACTCGGTGCCCATTGTTTTGAGCGCACG
CAGCGAACAAGATCGTCTGGACGCTGCTCTCGCTGACTCTCAAATACCAA
GGCAGGCGTTAGCAAGCTGCGGCGTCCGAGTTCTACTTTCAGCGTAAGAG
GAGCGCTGTCGCCAGTCCGCACAGCATCCATTCACGTACGGTAGCAGTCA
TA
UFO09743.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:32:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Papss-RH | 2686 | CG8363-RH | 480..1537 | 9..1055 | 4940 | 98.5 | Plus |
| Papss-RF | 2729 | CG8363-RF | 523..1580 | 9..1055 | 4940 | 98.5 | Plus |
| Papss-RE | 2396 | CG8363-RE | 190..1247 | 9..1055 | 4940 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:32:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19858814..19859704 | 168..1048 | 3880 | 98.3 | Plus |
| 3L | 28110227 | 3L | 19858377..19858493 | 53..169 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 19848354..19848398 | 9..53 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:32:16 has no hits.
UFO09743.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:57 Download gff for
UFO09743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RF | 519..1590 | 9..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:00:50 Download gff for
UFO09743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RE | 190..1261 | 9..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:17 Download gff for
UFO09743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RE | 190..1261 | 9..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:17 Download gff for
UFO09743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19848354..19848398 | 9..53 | 100 | -> | Plus |
| 3L | 19858378..19858492 | 54..168 | 100 | -> | Plus |
| 3L | 19858815..19859724 | 169..1064 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:00:50 Download gff for
UFO09743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19841454..19841498 | 9..53 | 100 | -> | Plus |
| arm_3L | 19851478..19851592 | 54..168 | 100 | -> | Plus |
| arm_3L | 19851915..19852824 | 169..1064 | 97 | -> | Plus |
