UFO09744.5prime Sequence
1110 bp (1001 high quality bases) assembled on 2011-09-19
> UFO09744.5prime
CAGTCGACATGGTCGTGTCCACTTTGCACATAACGCTGGAGAACAACGGC
AATGTTGCTGCGGGGCAGCCTGCTGCCGTTGCTGCTGCCAGTGTCGTTGG
GGCAGCAACATCGCCGACCAAGTTTGCCGTGCTGTCGGCGCAGCAGCTGC
AACTGCAACTGCAGCAGCAGCAGCAGCAGCAGAACGAAAAGGAGAACCAT
ATGAACAATAATAACAATAACAGCGACTATTGTGATATGAATGGCAATGG
AGTTGGAATGGGAAACGGTGGTAGTGGTGGACCGGGATCTCTGACCCCCC
AATCCCCCGACCAATATGTCGGCTCACCTGTATCATCCGCTGCCACGCCC
CAGCGCACCGCCTCCGCCCTGCGTCGCGGCATTCAAATTCAACGATCCTC
GACGCGTTTGCGACAACAACAGGAGCAACTGCGCCGACGACGCGAGGAGG
AGGAGCGCATAGCGCAGCAAAATGAATTCCTGCGGAACAGTCTTCGTGGC
TCCAGGAAGCTGAAGGCGCTTCAGGATACGGCTACGCCCGGTAAAGCGGT
TGCCCAGCAGCAGCAGCAGGCAACGCTGGCCACCCAGGTGGTTGGCGTGG
AGAATGAGGCATATCTGCCCGACGAAGACCAGCCGCAGGCGGAACAGATC
GATGGCTATGGCGAACTGATAGCGGCCCTTACCCGCCTGCAAAACCAGCT
GAGCAAGAGCGGACTGAGCACGCTGGCGGGTCGCGTTTCGGCCGCCCACA
GTGTCCTGGCCAGCGCCAGTGTGGCCCATGTCCTGCCCGCTCGCACCGCA
GTACTGCAGCGACGACGTTCCCGCGTCTCTGGTCCACTGCATCACAGTTC
CCTCGGATTGCAGAGGACATTGGGGAGCTGCTAATGCAATCGAATTCGGG
CGGCGGCCATCGAGCTGGGCACCTGCTGACCAGCCATGAAATGGAGGGTC
TGCTACTGGCCCACGATCGCATGCCATCAACACGGATGGCACGCCCTCCG
CACGCCCACGCCCATCGGATGACGCACGATCGACCTCACAGTCGTGGCTG
ACAGAGATCAGTGGGTGGGCCAGCTGTACCCGCCATGCCACCGGACATGC
ATGCTCGGAT
UFO09744.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sdt-RK | 3790 | CG32717-RK | 170..1178 | 9..1014 | 4790 | 98.7 | Plus |
| sdt-RD | 3838 | CG32717-RD | 218..1226 | 9..1014 | 4790 | 98.7 | Plus |
| sdt-RN | 5650 | CG32717-RN | 2441..3038 | 420..1014 | 2735 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8232493..8232907 | 9..423 | 2075 | 100 | Plus |
| X | 23542271 | X | 8235881..8236244 | 654..1014 | 1440 | 96.2 | Plus |
| X | 23542271 | X | 8235585..8235821 | 419..655 | 1185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6817 | 167..70 | 116 | 59.2 | Minus |
UFO09744.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:58 Download gff for
UFO09744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sdt-RD | 208..1226 | 1..1014 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:01:22 Download gff for
UFO09744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sdt-RD | 208..1226 | 1..1014 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:20 Download gff for
UFO09744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sdt-RD | 208..1226 | 1..1014 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:20 Download gff for
UFO09744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8232483..8232910 | 1..425 | 98 | -> | Plus |
| X | 8235592..8235820 | 426..654 | 100 | -> | Plus |
| X | 8235882..8236227 | 655..998 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:01:22 Download gff for
UFO09744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8126516..8126943 | 1..425 | 98 | -> | Plus |
| arm_X | 8129625..8129853 | 426..654 | 100 | -> | Plus |
| arm_X | 8129915..8130260 | 655..998 | 97 | -> | Plus |
