UFO09746.5prime Sequence
1088 bp (948 high quality bases) assembled on 2011-09-19
> UFO09746.5prime
CAGTCGACATGGGAGCCACTAGGAATGGCAAGTCCCTTTCGGGGTCTGAG
AACCTAATAATCGAGGTGGATGAGGACAAGATCCGTTGCAAGCAGTATTC
CTGGTACTTTGCCCCCATCTACCTCCTGTTCTGGGTGGGTCTCTTCTTCG
CCGTCATATATCCACTTTTCCAGGCCTTGCCCACCGGAATCAAAATCTCC
GAGGAGGCGGATAAACCGGGACAATTCGTGGCCGAGAGAGCTCAGGAAAT
ACTGCTGCAAATAAGTCGATTGGGACCCCGTGTGGTGGGTGATGTTGATA
ATGAAGTCACAGTTGTGAATTTGCTGCTCGCTGAAATCGAAAAAGTGCGC
CAGGTGCTGCGAGACGATGTCTATGAAATGGAGGTGGAGGTGCAACGGGC
ATCCGGATCCTACTTGATCAAAGGCCTAACGAATCACTATCAGGGTGTGC
AGAATGTGATCGTTAGACTGAGTACGAAGAGCTCAAATAGCACCTCCTAC
CTTTTGGTCAATAGTCACTACGATACCAAGCCGGGTTCACCTGGTGCCGG
AGATGATGCTGCCATGGTTGTCGTAATGCTGGAGGTACTGCGTCTGGTCG
CCGTTTCAGGGGATCCCTTCCTGCATCCGATTATATTCCTTTTCAATGGT
GCCGAAGAGCAGCCAATGCAGGGATCACATGGTTTCATCACGCAGCACAG
ATGGGCTGCCAACTGCAAGGCTCTACTGAACTTGGATTCCGCTGGCGCTG
GTGGACGTGATTTGCTCTTCCAGGGCGGTCCCAATCATCCCTGGGCTGAT
GGAGCATTACAGAAACAGTGCCCCGCACCCGTTCGCCACCACAACGGCCG
AGGAGATGTTCGGAGCTGGTATCATACCATCGGATACTGATTTCCGGATC
TTTCGGGACTTTGGAGTTGTGCCAGGCTGGACATGGCCGGCGTGTACAAT
GGAATTCGTTTTATCACACGAAATTTCGATCGCTTACGCCGGGTGATAAG
TTCTCCGATTCCCTGCAAGACTCCGGCACAATTTACCTGGACTGCTATGG
AGTTATTCGATGTAGGAAGAAATGTACGCATCAAAAGG
UFO09746.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13160-RA | 2733 | CG13160-RA | 69..1131 | 9..1078 | 4840 | 97.6 | Plus |
| CG13160-RB | 2736 | CG13160-RB | 69..1134 | 9..1078 | 4800 | 97.3 | Plus |
| CG33012-RC | 2849 | CG33012-RC | 604..1129 | 456..984 | 480 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12371764..12372279 | 31..546 | 2580 | 100 | Plus |
| 2R | 25286936 | 2R | 12372332..12372508 | 543..719 | 885 | 100 | Plus |
| 2R | 25286936 | 2R | 12372808..12372931 | 803..926 | 590 | 98.4 | Plus |
| 2R | 25286936 | 2R | 12372564..12372639 | 719..794 | 380 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rover | 7318 | rover ROVER 7318bp | 6630..6700 | 1010..939 | 114 | 63.9 | Minus |
UFO09746.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:51 Download gff for
UFO09746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13160-RA | 67..1138 | 9..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:56:46 Download gff for
UFO09746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13160-RA | 69..1140 | 9..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:03 Download gff for
UFO09746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13160-RA | 69..1140 | 9..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:03 Download gff for
UFO09746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12371662..12371685 | 9..32 | 100 | -> | Plus |
| 2R | 12371766..12372276 | 33..543 | 100 | -> | Plus |
| 2R | 12372333..12372507 | 544..718 | 100 | -> | Plus |
| 2R | 12372564..12372648 | 719..804 | 98 | -> | Plus |
| 2R | 12372810..12372930 | 805..925 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:56:46 Download gff for
UFO09746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8259167..8259190 | 9..32 | 100 | -> | Plus |
| arm_2R | 8259271..8259781 | 33..543 | 100 | -> | Plus |
| arm_2R | 8259838..8260012 | 544..718 | 100 | -> | Plus |
| arm_2R | 8260069..8260153 | 719..804 | 98 | -> | Plus |
| arm_2R | 8260315..8260435 | 805..925 | 98 | -> | Plus |
