UFO09750.5prime Sequence
1109 bp (1025 high quality bases) assembled on 2011-09-19
> UFO09750.5prime
CAGTCGACATGAACTTCAATCCGGCCAGCGTGGTAGCCGCCGCAGCAGCA
GCCGCACATCAGACGACCCATCTTCACCACCATCACCATCATCATCCGTA
TTTAAGCCATCACCAGAGCAGCATCACCCAACCACAAGGACAGCAACAAC
AGCTGATCCCACTGCCTGTCGGCGGAGGAGGCGGAAGTTTACCAGTGGGT
GGCAGTGGCGGTGGCGATACATCGCCCAAGATCATGGAGTGGACCAACGA
CGATGCTCTGGAGCTGATTGAGCAGTATCGCTGCCATACAGAGCTATGGA
ATCGTGCCGATCCCAAGTACAAGGATAAACTATGTCGATTCCGGGCATGG
TCGGAAATAGCCGAGCGTTTCGGTTGTAGCAAGGCGGAAGTGGAGCGGAA
GATGAACGTACTGCTCACACAGTATCGCCGGGAGAAGCACAAGATGTTCG
TGAAGATATACCAGGGCATACAGCCCAATCCGTCCAAATGGTATGCCTTC
AAGCGATTCGATTTCATGGAGGCGGGCGGCGGCAGCCTGAGCGGCGGTGG
GTCCGTGGGATCCGGTGTTAATGCCGCCAGCGGAAACCTGGTGCCGAATC
CCGTTTCCTCATCCGCTGCCGCTGCCGCCCACAACGGGCTAAACGGACTG
GCTGCCGCGGCAGCGGCCTACGAAAGCGGTACGATTGCGGCGGCGGGCAA
CGGAGGAGCACCACCCACTGTACCAGGTGGCGGAGCACCTGGCTCACAGA
CCGTCATGCAGCACAGACGCATCAGACCAAGAGCTGAAATATTTCGGAGC
GATGGGCCTGAACATACCCATGTTGATAGCGAGCAGCCAGACGCTGGACA
GTTGGAATACGGCGGGTCAGTACTCGCCACCGATATCGGGATCCGGCGGC
GGTGGATCCGAGCGAGGAGAAGTGCTGGGAGCGGCGGAGTGCCGCCACAG
CAACTGCGAGTACCGCTGCGATGAGCTATCATGGCGAGCTGGTGGTGAAG
CAGCAGTAGTGATTCAGCAGAGTCCCCTGAAGACCATGACCTCGGACAAT
GAGAAAATTACATACCAGGAGATGTGGCCGGCGCACGCGACTGGACACTG
GCTGCAAGG
UFO09750.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-RD | 4576 | CG5953-RD | 413..1497 | 9..1078 | 5020 | 98.2 | Plus |
| CG5953-RB | 3796 | CG5953-RB | 675..1759 | 9..1078 | 5020 | 98.2 | Plus |
| CG5953-RA | 3534 | CG5953-RA | 413..1497 | 9..1078 | 5020 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:32:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16527390..16528184 | 801..9 | 3875 | 99.7 | Minus |
| 2L | 23513712 | 2L | 16511186..16511447 | 1053..801 | 935 | 95.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:32:31 has no hits.
UFO09750.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:00 Download gff for
UFO09750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RB | 667..1751 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:02:56 Download gff for
UFO09750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RA | 405..1489 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:25 Download gff for
UFO09750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RA | 405..1489 | 1..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:25 Download gff for
UFO09750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16511165..16511446 | 802..1071 | 94 | <- | Minus |
| 2L | 16527390..16528192 | 1..801 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:02:56 Download gff for
UFO09750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16511165..16511446 | 802..1071 | 94 | <- | Minus |
| arm_2L | 16527390..16528192 | 1..801 | 99 | | Minus |
