UFO09751.5prime Sequence
1114 bp (989 high quality bases) assembled on 2011-09-19
> UFO09751.5prime
CAGTCGACATGGATTACGTGTATTGCGGCACCGACCCCATCGGGGCCTCC
GAAGACATACTAAGTGTTTATGACGCGGGATCTGCGCCGGGAAACGGGCA
CTTTTCGCCCAGCTTCAATGGATTCAACATCGGCACCACCGATCCGGAAT
ATGTGGAGCTTGTGCCCGTGCTTGCCGACGGCGGGGAGCACTTCGGCGTT
TCCAGCGTGGCGTTCGACGACTACGAAGAGCTGCTGTGGATGGGCAACCA
GGGCGGCCACGTCACATCGTACTACACAAACTCCATGCAGAAGTACACAT
CCTTTCAGGTCCACGCCACCGACATTGTGCGCGACATCTCCACCCTGGAC
TCCGGAGTGCTGGCGCTCACGCAGACCTCGCTGCGTCATCAGATCCGCAG
GGGTCTGCCCAAGTTTACCTTCAAATCGAACAACATGAAGGAGATGGTGA
GCATGCTGCAGCTATCACCGCATCGTCTGGTCATGGCCGGACTGCAGGAC
GAGCTTATCGACTTCGACCTGCGCACGCTCAAGGAAACCCGCATAGAGCA
TGTGGGTGCCGGCGGATGCACGGTGCTACGCAAGAATTCACGTTATCTGT
TTGCCGGCGACCAGCTGGGAACGGTAACGTTGCGCGACCTGAACAGCCTG
AGTGTTCAGCACACAATCAAGACGCACACCAACATCCTTTCGGACTTCAG
TGTCCAGGGAAATCTGCTAATCTCTTGCGGCTACAGCGGAAGGCAAAATA
ACCTGTCCATCGACCGCTTCCTAATGGTCTACGATCTGCGCATGCTGCGC
CTGATCGCGCCCATTCAAGTGATGATTGATCCGCAGATGTTGAAGTTCCT
GCCATCGCTGACATCCCAACTGGCCGTCGTGTCCAGCTACGGCCAGGTTC
AGCTGGTGGACACTGGGGAGCTCAGCGAGCCGCGAGTATCCATGTACCAG
ATCAACACCAACGGCAGCCAGGTGCCTCAGCTCGACATTAGCTCCCTCTC
ACAGGCCATGGCATTTGGGGACAGTCGGGCCACATCAAACATGATGCCGC
TGTACAAACGCCCTCCAGCCGCAGTCAATCCTCTACCTCCCCGAAGCCAC
AAGAAGTTTGCGAA
UFO09751.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PAN2-RB | 4048 | CG8232-RB | 132..1208 | 9..1086 | 5110 | 98.8 | Plus |
| PAN2-RA | 4051 | CG8232-RA | 132..1208 | 9..1086 | 5110 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8928936..8929574 | 425..1062 | 2885 | 97.8 | Plus |
| 2R | 25286936 | 2R | 8928458..8928649 | 64..255 | 960 | 100 | Plus |
| 2R | 25286936 | 2R | 8928709..8928878 | 255..424 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 8928300..8928357 | 9..66 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:32:35 has no hits.
UFO09751.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:01 Download gff for
UFO09751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8232-RA | 121..1212 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:03:25 Download gff for
UFO09751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8232-RA | 126..1217 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:26 Download gff for
UFO09751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PAN2-RA | 126..1217 | 1..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:26 Download gff for
UFO09751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8928294..8928354 | 1..63 | 93 | -> | Plus |
| 2R | 8928458..8928648 | 64..254 | 100 | -> | Plus |
| 2R | 8928709..8928878 | 255..424 | 100 | -> | Plus |
| 2R | 8928936..8929605 | 425..1097 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:03:25 Download gff for
UFO09751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4815799..4815859 | 1..63 | 93 | -> | Plus |
| arm_2R | 4815963..4816153 | 64..254 | 100 | -> | Plus |
| arm_2R | 4816214..4816383 | 255..424 | 100 | -> | Plus |
| arm_2R | 4816441..4817110 | 425..1097 | 97 | | Plus |
