UFO09754.5prime Sequence
1080 bp (992 high quality bases) assembled on 2011-09-19
> UFO09754.5prime
CAGTCGACATGGACTCCTACTTCGACTCGGCCATCGAGTACAATCGATCC
AACCCCATCAGCCTGGCCAGGACCAGCAGCCAGGCCCAAACCGTGCAGAA
CGAGAAGAACTGGGAGTGGTCGTACCTTGTGAGAAAATGTCGCAACCTGG
AGCTGGAGGACTCGTACGACCTATACATGCGTCGCCTGCGCGTCGGCTAC
CTGTCGCTGTTCATCTTCATCCACGTGGCGGTGACGGTGATCCACACGCT
GCTGCTGCTGACCACGCCGGAGATCAAGTACGTGTACGTGGACATGGTGG
CCTACATGTGCTCCGGCCTGGTCATCTGGGTGGTGCTGGGCGTGAACTTT
CGCAGCGAGCTGGTGAGCAAGCACGGCTGGGTGGTCTACGCCACCTCCTG
GCTGGCGGTGTGTGTAATGGTCCTGATGGACATCGGACTGAATGTTTACC
ACGCCACCAGCCACAACGACATCCTGAATCCGATCTACGATGCGTATACG
CTGTACGCCATATACATGTTCATGCCGGTGCCGTACCTGCTGCAGCCGTT
TGTCCTTGGATCGGCAGTCACCTTTTGCTACATAATAAACTACAGCTTCG
TGATCACCGCCAAGGATGACAACCAAATGCACAGCATCCTGAACGAGGCC
ATATACCTGAGCTGTGTCAACCTACTGGGCATTTTCTTTCGCCTGATGAG
GGATATAGCGCTACGCACCACCTTCCTCGATCGCCGGCAGTATGTGGAGG
AGAATCTCCTGTTGCGCTATGCCAGGGATCACGAGCGGAGTCTCTTGCTT
AGCATCCTGCCTGCCCAGATCGCCGATCGGCTGCAGGAGGATGTGAAGAA
CCGCATCGAGCGATCCAGCAGCAGCACCAGCAGCAGTCGCAGGGGATCTG
CGCAGAGTGCGATAGCCAGACCCTTAAAACGTGGCGACACGGACCATGGC
ACCCTCTTCATGAGCCCCACGAAGATGTCACCGTCCTCTACGCGATGTGG
TCACTACCCCACTGACTGCACCTGATGTGAGAGCTAGTGGAGGCTCTGCA
CGATCCTCTCTGCTTCGACTGGCAAGCAGA
UFO09754.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ACXD-RB | 4118 | CG5712-RB | 526..1589 | 8..1055 | 4870 | 98.1 | Plus |
| ACXD-RA | 4112 | CG5712-RA | 526..1589 | 8..1055 | 4870 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2239092..2239904 | 131..939 | 3835 | 99.3 | Plus |
| 3L | 28110227 | 3L | 2238427..2238550 | 8..131 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 2239978..2240024 | 949..994 | 185 | 97.9 | Plus |
Blast to na_te.dros performed 2014-11-26 23:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1525..1565 | 846..886 | 115 | 75.6 | Plus |
UFO09754.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:03 Download gff for
UFO09754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACXD-RA | 518..1604 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:04:30 Download gff for
UFO09754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACXD-RA | 520..1606 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:29 Download gff for
UFO09754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ACXD-RA | 520..1606 | 1..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:29 Download gff for
UFO09754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2238421..2238550 | 1..131 | 96 | -> | Plus |
| 3L | 2239093..2239916 | 132..949 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:04:30 Download gff for
UFO09754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2238421..2238550 | 1..131 | 96 | -> | Plus |
| arm_3L | 2239093..2239916 | 132..949 | 99 | -> | Plus |
