UFO09755.5prime Sequence
1132 bp (1006 high quality bases) assembled on 2011-09-19
> UFO09755.5prime
CAGTCGACATGTCCGCCGTACCGGTTGCCATCAAAACGGAGGAAGTTATT
CTAGAGCACGCCGAATACAACAGCGCCGAGGAATTGGATGAGGAATTGCA
ATTGCAACTAGAGGATTCAGGGGGTGAGAACTATCACATCGAGTTCGCCA
GCGAGTCAGCTCATCAGGGTTCTCAGCGTCGACAGTCGAGCATGAGCGGT
ACGAATACCTCCAAGGGTGGAGGAGGAGGGGGCAGCGGGGCCTTGAGCGA
TGGAGACGGTTCGGGAAAGCCCCTTGTGGACAGCGAGAAGCGAATGCGTC
GGGAAATCGCCAACAGCAACGAGCGCAGACGCATGCAGAGCATCAATGCC
GGATTCCAGAGTCTGCGATCCCTGCTCCCGAGACACGAAGGCGAGAAGTT
GAGCAAGGCGGCCATCCTACAACAGACCTTCCAATACATTGTGGAACTGG
AGAACCAGAAGACGCAGCTGCTGACGCAGAACAGTGAACTGAAGCGACAG
GTGGGCGAGCACGAGGCCGGCGGTTCTGGCGATGGTGGTGGTACCAACTC
CGGCGGAAACTACAATGATTCCAATGCCAGCGGGGGCAATTCCACGGCGG
TGGCCATCAAGAAACGGAAGCTGACTGATAACGTGATTAACATCCAGGCG
ATTAGTGACAGTTCCGACGAAGGTCTGGGATCGATGTCTCCAGAGCCGAT
GACTCTGCTGACAGCCGGCGGAGCGGCGGCCACCAAACTGAGCAATGCTG
CTACTCTTCTGGCGGCCAAGGAGCTGCATGAGTCGAAGAAGCAGTTGGAG
AAAGGAGCGCAGTCTGCGGCGACTCCTCGAGGATGAGCTCCAGATGATCA
AGCGGCAGCTGTACAGCGTGCAACCGCCACCGCCCGGAACCAGCTGTGCC
CGCCGCATCCGGCGGCAGTAGTGGCCCCTACCATTCCACCGTGAGGTCAT
CGAGCCACACCGAATAACTTTGTGCGCCAGCGAGGAATTTGGAGGAACCT
TGGCCGGCACCTGTCCCCGTATGTGGAAATCGTGGAAATTGACCTGGCCC
AGCCAGCCAGGTGGTCCTGTGCCTCCAAGCACATCCGAAGGAACCTTGAA
GCCCGAATGCCGCCTGCCCGAGAAACTCTAAA
UFO09755.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crp-RB | 4402 | CG7664-RB | 540..1588 | 7..1072 | 4770 | 97.7 | Plus |
| crp-RA | 3537 | CG7664-RA | 540..1588 | 7..1072 | 4770 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16266435..16267019 | 998..406 | 2460 | 97.5 | Minus |
| 2L | 23513712 | 2L | 16278862..16279169 | 408..101 | 1540 | 100 | Minus |
| 2L | 23513712 | 2L | 16287098..16287191 | 100..7 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:32:47 has no hits.
UFO09755.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:14:03 Download gff for
UFO09755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crp-RA | 531..1569 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:05:02 Download gff for
UFO09755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crp-RA | 533..1571 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:42:31 Download gff for
UFO09755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crp-RA | 533..1571 | 1..1053 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:42:31 Download gff for
UFO09755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16278863..16279169 | 101..407 | 100 | <- | Minus |
| 2L | 16287098..16287196 | 1..100 | 96 | | Minus |
| 2L | 16266387..16267017 | 408..1053 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:05:02 Download gff for
UFO09755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16266387..16267017 | 408..1053 | 96 | <- | Minus |
| arm_2L | 16278863..16279169 | 101..407 | 100 | <- | Minus |
| arm_2L | 16287098..16287196 | 1..100 | 96 | | Minus |
