UFO09768.5prime Sequence
1103 bp (1008 high quality bases) assembled on 2011-09-19
> UFO09768.5prime
CAGTCGACATGGACTACGATTTCAAGATGAAAACGCAGATAGAGCGTACG
AAAGTGGAGGACCTATTCAACTACGAGGGCTGTAAGGTGGGACGCGGAAC
ATACGGCCACGTCTACAAGGCGAAATGGAAGGAGACAAGCGATGGCAAAG
AATATGCCTTGAAGCAGATCGACGGCACCGGATTGTCCATGTCCGCCTGC
CGCGAGATCGCATTGCTGCGCGAACTGAAGCATCAGAACGTAATTACCCT
CATCCGGGTGTTTCTGTCGCACAACGACCGCAAGGTGTTCCTGTTGATCG
ACTATGCGGAGCACGACCTGTGGCACATCATTAAGTTCCATCGGGCTGCT
AAGGCCACCAAAAAGCAGGTTGTGGTTCCCCGCGGTATGGTTAAAAGTCT
GCTATATCAGATTCTGGATGGGATTCACTATCTGCACAGTAATTGGGTGC
TACATCGTGACCTGAAGCCGGCCAACATCCTGGTGATGGGCGATGGCAAC
GAGAGGGGCCGCGTAAAAATCGCCGACATGGGTTTCGCGCGGCTCTTCAA
TGCCCCATTGAAACCGCTGGCAGATCTGGATCCCGTGGTGGTTACCTTTT
GGTATCGCGCTCCGGAACTGCTGCTTGGCGCTCGTCACTACACCAAGGCT
ATCGACATCTGGGCTATTGGCTGTATTTTCGCCGAACTACTCACTTCGGA
GCCCATCTTCCATTGCCGCCAGGAGGACATAAAGACCAGTAATCCGTACC
ATCACGATCAGCTAGACCGCATCTTCAATGTGATGGGCTTTCCGCAGACA
AGGACTGGGAGGATATCAAGAAGATGCCGGACATCATACGCTGACAAAGG
ACTTTAAACGCTCCACATACTCCACCTGCTCGCTGGCCAAATACATGGAA
AGGCACAACATAAAGCCAGACAGCAAGGCCTTTCACCTGCTGCAGAGCTG
CTGCTAATGATCCCAACAAGCGCATCACTCGACAGCCATGCTGATCAGTA
CTTCAGGAGGGCGCAGCCCACGCAGACTGTTCGCCGCTGCCCCATACGTA
TCCAGCGTGATCCTCCCCGACGACGACTGTAGATAGTCGATATAGCGAGC
GTC
UFO09768.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk8-RA | 1529 | CG10572-RA | 66..1154 | 9..1077 | 4920 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9837570..9838414 | 978..138 | 4010 | 99.4 | Minus |
| 3L | 28110227 | 3L | 9838475..9838605 | 139..9 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:29:08 has no hits.
UFO09768.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:17 Download gff for
UFO09768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk8-RA | 40..1122 | 3..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:33:49 Download gff for
UFO09768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk8-RA | 81..1163 | 3..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:46 Download gff for
UFO09768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk8-RA | 60..1142 | 3..1065 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:46 Download gff for
UFO09768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9837467..9838412 | 140..1065 | 97 | <- | Minus |
| 3L | 9838475..9838611 | 3..139 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:33:49 Download gff for
UFO09768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9830567..9831512 | 140..1065 | 97 | <- | Minus |
| arm_3L | 9831575..9831711 | 3..139 | 97 | | Minus |
