UFO09772.5prime Sequence
1147 bp (964 high quality bases) assembled on 2011-09-19
> UFO09772.5prime
CAGTCGACATGAGTACCGAAAAGTGGGAGGACAACGAGGAAATCAAAATA
TTCCGCGAATATTTGCGCATAGCTACGGTGCAGCCAAATGTGGATTACAC
CGAATGTGTGGAGTTCCTGAAAAGGCAGGCTCACAGCCTGGATCTTCCCG
TGGATGTTATATATCCAGTGGAGAAGAAGCCTGTGGTGATCATCAAGTGG
TTGGGCACCGAACCGGAGCTGCCCTCCGTCATTCTCAACTCGCACATGGA
TGTGGTGCCGGTGTTCCGTGACAAGTGGACCCACGATCCCTTCGCTGCCG
ATATCGATGAGGAGGGCAGGATCTTTGCGCGCGGTACTCAGGACATGAAG
TCGGTGGGCACAGGATATCTGGGTGCCATCCGCCTGCTTAAGGCAAGTGG
TGTCCAGCCCAAGCGCAATTTCTTCGTGACCTTTGTGCCCGATGAGGAGA
TCGGCGGCGAGCTGGGCATGCAGGAGTTCGTCAAAACGGAATACTACAGC
AACATGAATGTTGGTTTCAGTCTGGACGAGGGCGGCACCAGTGAAATAGA
TCTGTTCTATGTCTTTTATGCCGAACGTATGCGATGGGGTCTCAAGCTGA
ATTTCAGTGGAACCTCTGGACACGGCTCCATGTTGCTGCCCAGCACTGCC
GGCGTGAAACTGAACTATGTGCTCAACAAGCTGACGGAGTTCCGCGAATC
GCAGTTCAGAGGCTGGCCAATGATCAGACAATCAACATCGGTGATGTGAC
AACTATCAATCTCACCCAGCTGAGCGGTGGAGTCCAGAGCAATGTGGTGC
CTCCTCATTTCGAGGCTGTCTTCGACATGCGTCTGTCCATCACCCTGGGA
TGTGGTTGCCTTTGAAAAAACAAATCCCCGATTGGTGCGGAGGAGGCAGG
TGGCGGCATCGAGATCCTCCTTCGACGAGAAGGAACCCTACGTGGCCCCC
CACAAAAATCGACGACCTCCAATCCATTCTGGCTTGGCTTTCCAAGGCTG
TGCCGATGAACTTGGCCTAAAGAATCTACCCCATTGTCTGCCCGGTGCAC
CCGAAAGCAGGAACATTCGAGCCTCAGGCCATTCCAGCCCTTGGAAACCT
CTCCACCCAATCAAAAATACCACCCATGCCCCCATCCCATGATATCC
UFO09772.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17109-RB | 1373 | CG17109-RB | 44..1147 | 9..1124 | 4930 | 97.1 | Plus |
| CG17109-RA | 1313 | CG17109-RA | 44..1147 | 9..1124 | 4930 | 97.1 | Plus |
| CG6733-RA | 1291 | CG6733-RA | 26..933 | 3..909 | 1305 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23095883..23096373 | 100..590 | 2455 | 100 | Plus |
| 3R | 32079331 | 3R | 23096431..23096822 | 588..984 | 1565 | 97 | Plus |
| 3R | 32079331 | 3R | 23097912..23098400 | 105..590 | 640 | 75.9 | Plus |
| 3R | 32079331 | 3R | 23095733..23095823 | 9..99 | 440 | 98.9 | Plus |
| 3R | 32079331 | 3R | 23099802..23100165 | 180..543 | 425 | 74.5 | Plus |
| 3R | 32079331 | 3R | 23092066..23092491 | 110..532 | 385 | 73.2 | Plus |
| 3R | 32079331 | 3R | 23098460..23098776 | 591..909 | 365 | 77.2 | Plus |
| 3R | 32079331 | 3R | 23100283..23100540 | 608..865 | 310 | 76.4 | Plus |
| 3R | 32079331 | 3R | 23091871..23091961 | 9..99 | 245 | 84.6 | Plus |
| 3R | 32079331 | 3R | 23093909..23094091 | 176..358 | 240 | 75.4 | Plus |
| 3R | 32079331 | 3R | 23092616..23092811 | 604..798 | 225 | 75.5 | Plus |
| 3R | 32079331 | 3R | 23097753..23097841 | 3..91 | 190 | 80.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:29:15 has no hits.
UFO09772.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:18 Download gff for
UFO09772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17109-RA | 37..1161 | 1..1143 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:34:50 Download gff for
UFO09772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17109-RA | 38..1162 | 1..1143 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:50 Download gff for
UFO09772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17109-RA | 38..1162 | 1..1143 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:50 Download gff for
UFO09772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23096432..23096849 | 589..1012 | 96 | -> | Plus |
| 3R | 23095727..23095823 | 1..99 | 94 | -> | Plus |
| 3R | 23095883..23096371 | 100..588 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:34:50 Download gff for
UFO09772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18921449..18921545 | 1..99 | 94 | -> | Plus |
| arm_3R | 18921605..18922093 | 100..588 | 100 | -> | Plus |
| arm_3R | 18922154..18922571 | 589..1012 | 96 | -> | Plus |
