UFO09774.5prime Sequence
1126 bp (1025 high quality bases) assembled on 2011-09-19
> UFO09774.5prime
CAGTCGACATGAAGTGGATGTCCTTGGTCTTTCTATGCGGTCTGCTCGCC
ATGGCAGTGGCTTCTCCGTTAAATCCGGGTAATGTCATTATCAATGGAGA
TTGCCGTCATTGTAATGTTCGCGGAGGCGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGA
ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTT
GCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTA
AATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA
TTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGC
CACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATT
CACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAA
CAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCAT
ACGAAATTCCGGATGAGCATTCATCACGCGGGCAAGAATGTGAATAAAGG
CCGGATAAAACTTGTGCTTATTTTTCTTTACGGTCTTTAAAAAGGCCGTA
ATATCCAGCTGACGGTCTGGTTATAGGTACATTGAGCACTGACTGAAATG
CCTCAAATGTTCTTTACGATGCCATTGGGATATATCAACGGTGGTATATC
CAGTGATTTTTTTCCTCCATTTAGCTTCTAGCTCCTGAAAGATCCAATAC
TTCGTATAGCATACATTATACGAAGTTATAGATCCATATATTGGACGCAT
TTTATCAGGTTATTTGTCTCTCATGG
UFO09774.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:29:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15065-RA | 218 | CG15065-RA | 31..150 | 9..128 | 600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18390106..18390174 | 60..128 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 18389989..18390040 | 9..60 | 260 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 697..764 | 123 | 68.1 | Plus |
UFO09774.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:19 Download gff for
UFO09774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15065-RA | 25..157 | 1..136 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:35:21 Download gff for
UFO09774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15065-RA | 24..156 | 1..136 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:51 Download gff for
UFO09774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15065-RA | 24..156 | 1..136 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:51 Download gff for
UFO09774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18389982..18390040 | 1..60 | 93 | -> | Plus |
| 2R | 18390107..18390174 | 61..128 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:35:21 Download gff for
UFO09774.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14277487..14277545 | 1..60 | 93 | -> | Plus |
| arm_2R | 14277612..14277679 | 61..128 | 100 | == | Plus |
