UFO09775.5prime Sequence
1099 bp (987 high quality bases) assembled on 2011-09-19
> UFO09775.5prime
CAGTCGACATGAAGTGCCTCCTGGTGACGATAGCCTGTTTGATCACGTGC
TCCAGTGTGGGTGCCCTCGTGCACTATATGAAACTGGAAAAAGGAAAGAA
CGGATGCAAATCGCCCAAGGGTACAGAGATGGCTGTGGGTGCTGTTGAGC
AGGATGAAAAGACTTGTGGAGCTCTTACTTGTCAAAATACGGAAGGGGAT
GCCTTCATCCACTACTGTCAGATACCTGCCTCTTTTGCGGAATGTGTGGA
GACCGCTGTTCTGACGGACGTTGACTTTCCACAATGCTGTTGGACTTGTG
CCGATTGGGCGGACTGCGATGGAGAAGAACCTGGACCAGGGGATGAAGCT
CCTGCTGCCGACGGAGCTGCTGACGCACCACCTCCTGCTGCAAGAACCCA
TGCAAGAAATTCTAAGTACCAGGCAACTACAACTGATACTACAGAAAGTG
AAAGGCCACGCAGCAAAGGAAAATGGGGTTCCAAGAGGAGCACTACCACA
TCCGATGAATCCGAATTTCCCGAGGGAATCAATATAAGGTTTGGCGGTGG
AACACCGATCTCCAAGTTTGGCGAAGACAGCATTGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAGT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAT
ATTTGCCCATGGTGAAACGGGGCGAGAGTTGTCCATATGGCACGTTTAAA
TCAACTGGTGAAACTCACCCAGGATGCTGAAACGAAACTATTCTCATTAA
ACCTTAGAATAGCAGTTTCCCCGTACCGCCATTCTGCATTATGTTGTGA
UFO09775.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34460-RA | 714 | CG34460-RA | 27..602 | 9..584 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16827274..16827643 | 215..584 | 1850 | 100 | Plus |
| 2R | 25286936 | 2R | 16827042..16827159 | 97..214 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 16826898..16826985 | 9..96 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:29:21 has no hits.
UFO09775.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:20 Download gff for
UFO09775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34460-RA | 2..587 | 9..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:35:49 Download gff for
UFO09775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34460-RA | 18..612 | 1..598 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:53 Download gff for
UFO09775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34460-RA | 18..612 | 1..598 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:53 Download gff for
UFO09775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16826889..16826985 | 1..96 | 95 | -> | Plus |
| 2R | 16827042..16827159 | 97..214 | 100 | -> | Plus |
| 2R | 16827274..16827653 | 215..598 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:35:49 Download gff for
UFO09775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12714394..12714490 | 1..96 | 95 | -> | Plus |
| arm_2R | 12714547..12714664 | 97..214 | 100 | -> | Plus |
| arm_2R | 12714779..12715158 | 215..598 | 98 | == | Plus |
