UFO09777.5prime Sequence
1090 bp (979 high quality bases) assembled on 2011-09-19
> UFO09777.5prime
CAGTCGACATGAAGCTACAGTTGGCTCTCGTTCTATGTGGATTGACTCTG
GCCTTGGGCCAGATTGTTCCCCGCAGCTCCTGGTGTCCTGTGCCCATCTC
GCCGCGAATGCCCAGGCTCATGGTACCGGTGCGACTGATTATCATCCATC
ATACAGTCACGGCCCCTTGCTTCAATCCGCATCAGTGCCAGTTGGTACTT
AGGCAAATTCGAGCCGATCATATGCGCAGAAAGTTCAGGGATATTGGCTA
TAATTTCCTGATCGGCGGGGATGGTCGAATCTACGAGGGCTTGGGTTTCG
GCATCCGTGGCGAGCATGCTCCCCGCTATAACAGCCAGTCCATTGGCATT
GCTTTCATTGGCAACTTCCAGACTGGATTACCTCCTTCGCAGATGCTCCA
GGCTGCCCGAACCCTCATCCAAATCGCTGTGCAGCGTCGCCAGGTTTCGC
CCAACTATTCCGTGGTGGGTCATTGCCAAACGAAGGCCACTGCTTGTCCG
GGAATACACCTTCTCAACGAGCTCAAAAAGTGGCCAAATTGGCGACCAAA
GCCTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGAACCGCCAGCGGCATCAGC
ACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAACGGGGGCGAAG
AGTGTCCATATGCCACGTTTAAATCAACTGTGAAACTCACCCAGGATGCT
GAAACGAAAAACATATTCTCAATAACCCTTTAGAATAGCAGCTTCACGGT
ACCGCCAATCTGCATATGTGTAGACTGCGATCGTCTGGCA
UFO09777.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-SB2-RA | 688 | CG9697-RA | 6..553 | 7..554 | 2740 | 100 | Plus |
PGRP-SB2-RB | 668 | CG9697-RB | 6..533 | 7..554 | 2430 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16726546..16726911 | 7..372 | 1830 | 100 | Plus |
3L | 28110227 | 3L | 16726972..16727153 | 373..554 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:29:27 has no hits.
UFO09777.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:21 Download gff for
UFO09777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SB2-RA | 1..561 | 2..564 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:36:49 Download gff for
UFO09777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SB2-RA | 1..561 | 2..564 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:56 Download gff for
UFO09777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-SB2-RA | 1..561 | 2..564 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:56 Download gff for
UFO09777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16726540..16726911 | 1..372 | 98 | -> | Plus |
3L | 16726972..16727161 | 373..564 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:36:49 Download gff for
UFO09777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16720072..16720261 | 373..564 | 97 | == | Plus |
arm_3L | 16719640..16720011 | 1..372 | 98 | -> | Plus |