UFO09780.5prime Sequence
1147 bp (997 high quality bases) assembled on 2011-09-19
> UFO09780.5prime
CAGTCGACATGAGCAAGGAAATCCGTTTGGCCACCGTCAACGAACACAAC
AAAGCCACGGATCTGTGGGTGGTCATCGACAACAAGGTCTACGATGTGAC
CAAGTTCCGTCTCGAGCATCCCGGTGGCGAGGAATCCCTGGTGGATGAGG
CCGGTCGCGATGCCACCAAGGCCTTCAATGACGTGGGTCACAGCTCGGAG
GCGAGAGAGATGTTGAAGAAATACTACATTGGTGACCTGGCTGCTGCGGA
CATCAAGAAGAAAAGCCCAATTAGCTGCCGTCATGTGGCACTGGCCCTGG
GCGCCGCCTTCATCGGCATCTCGCTGGTCTATGTGATCCGACGCGGTGTG
GCCAGAAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAG
GGAAATAGGGCCAGGTTTTCACCGTAACACGCCGCATCTTGCGAATAATA
TGTGTAGAAACTGTGGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAA
ACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACCACTATC
TGGATCACCCAGCCTCACCGGTCTTCAATGCATACGAAATTCCGGAATGA
CAATCATCAGGCGGGCAAGAATGGTGAATAAAGGCCGGGATAAACCTTGG
GCCTAATTTTTCTTTACGGCTTAACGCCGTAATATATCCAGCTGTGA
UFO09780.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:29:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3566-RB | 550 | CG3566-RB | 86..436 | 9..359 | 1755 | 100 | Plus |
| CG3566-RD | 770 | CG3566-RD | 86..351 | 9..274 | 1330 | 100 | Plus |
| CG3566-RC | 1607 | CG3566-RC | 86..351 | 9..274 | 1330 | 100 | Plus |
| CG3566-RD | 770 | CG3566-RD | 570..656 | 273..359 | 435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:29:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6276532..6276639 | 116..9 | 540 | 100 | Minus |
| X | 23542271 | X | 6276370..6276465 | 205..110 | 465 | 99 | Minus |
| X | 23542271 | X | 6275086..6275172 | 359..273 | 435 | 100 | Minus |
| X | 23542271 | X | 6276228..6276298 | 274..204 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:29:34 has no hits.
UFO09780.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:22 Download gff for
UFO09780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3566-RB | 32..390 | 1..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:37:51 Download gff for
UFO09780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3566-RB | 78..436 | 1..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:58 Download gff for
UFO09780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3566-RB | 78..436 | 1..359 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:58 Download gff for
UFO09780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6275086..6275170 | 275..359 | 100 | <- | Minus |
| X | 6276228..6276296 | 206..274 | 100 | <- | Minus |
| X | 6276370..6276458 | 117..205 | 100 | <- | Minus |
| X | 6276532..6276647 | 1..116 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:37:51 Download gff for
UFO09780.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6169119..6169203 | 275..359 | 100 | <- | Minus |
| arm_X | 6170261..6170329 | 206..274 | 100 | <- | Minus |
| arm_X | 6170403..6170491 | 117..205 | 100 | <- | Minus |
| arm_X | 6170565..6170680 | 1..116 | 97 | | Minus |
