UFO09786.5prime Sequence
1122 bp (1018 high quality bases) assembled on 2011-09-19
> UFO09786.5prime
CAGTCGACATGTGCATCAATTGGCATCCAATATTTATTTTTGCTTGTTTA
AGTCAGTTGGGCGCAGCCCAAGAACCTTTAATTTTCGAAACATCTCGTAG
CCCATGGAACAATGCCGCCGCAACGACGTCAATACCAATTTCGCCCACCA
GCGCAAACTTAGTTTTGGTTAACAATGTAAGAATACCAGGAGGTCTTACA
CCATTTGTACCAGCACCGGCCCCAACCAAGGAATTTCTGAACTGCTTTGG
TAACTGTCCCACCACATCGCAATACAATCCCATTTGCGGCAGCAATATGC
AGCTTTATATGAACGAGGAAAAATTTAATTGTGCTCGTTTCTGTGGAGCT
GACATTCAAATAGTTCGAAGAGGTTCTTGTGAGGGTCTTTTTGCGATGAC
GCGAGGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA
CATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATC
AGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGC
GAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAAACTCAC
CCAGGGATTGGCTGAGACGAAAAACATATTCTCATAAACCCTTTAGGGAA
ATAGGCCAGGTTTTCACCGTACACCGCCACATCTTGCGAATATATGTGTA
GAACTGCCGGAATCGTCGTGTATTCACTCCGAGCGATGAACGTTTCAGTT
TGCTCATGGAAACGGTGTACAGGGTGACACTATCCATATCACAGCTCACG
TCCTTCATGCCAACGAAATCGATGAACATCATCAGCCGGCCAGATTGATA
GCCGATACCCTGGCTATTTCTT
UFO09786.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:29:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34454-RA | 603 | CG34454-RA | 49..447 | 9..407 | 1995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 231960..232302 | 351..9 | 1715 | 100 | Minus |
| 3L | 28110227 | 3L | 231837..231893 | 407..351 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:29:40 has no hits.
UFO09786.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:24 Download gff for
UFO09786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34454-RA | 40..447 | 1..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:38:55 Download gff for
UFO09786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34454-RA | 40..447 | 1..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:02 Download gff for
UFO09786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34454-RA | 40..447 | 1..407 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:02 Download gff for
UFO09786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 231837..231892 | 352..407 | 100 | <- | Minus |
| 3L | 231960..232311 | 1..351 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:38:55 Download gff for
UFO09786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 231837..231892 | 352..407 | 100 | <- | Minus |
| arm_3L | 231960..232311 | 1..351 | 98 | | Minus |
