UFO09787.5prime Sequence
1118 bp (1002 high quality bases) assembled on 2011-09-19
> UFO09787.5prime
CAGTCGACATGGGAATTTTGGGCTTATCTAAGCTCATTGCCGATCTGGCG
CCACAGGCGATTCGCGAAAGTGAGATGAAGCATTTTTTCGGTCGCAAGGT
AGCAATCGATGCTAGTATGTGCCTGTACCAGTTCCTCATCGCCGTGCGCT
CCGAAGGCGCCCAGTTGGCCACCGTAAATGGTGATCCCACGTCCCACTTA
ATGGGCATGTTCTACCGCACCATCCGATTGCTGGACAACGGAATCAAGCC
GGTATATGTCTTCGACGGAAAGCCACCAGATCTCAAGTCCGGTGAGCTGG
CGAAGCGCGCCGAGCGGCGGGAGGAAGCGGAGAAGGCACTGAAGGCGGCC
ACCGATGCGGGAGATGATGCCGGTATCGAAAAGTTTAATCGCCGATTGGT
CCGGGTAACGAAGGAGCACGCCAAAGAGGCCAAGGAACTGCTCACACTAA
TGGGTGTGCCCTATGTTGATGCACCGTGCGAAGCGGAGGCCCAGTGTGCC
GCTCTGGTGAAAGCTGGAAAGGTTTATGCCACCGCCACGGAGGATATGGA
TGCCCTCACATTCGGATCTACAAAACTGTTGAGATACCTTACCTACAGCG
AGGCACGAAAGATGCCCGTCAAGGAGTTCAGCTACGACAAGCTGTTGGAA
GGTCTGGCCATTAACAATCGAGAGTTCATTGATCTATGTATTCTGCTGGG
TTGCGATTACTGTGAGAGCATCAAGGGTATTGGACCCAAGCGAGCGATCG
AACTGATCAACACCTATCGGGATATAGAGACTATTCTGGATAACCTGGAC
TCTAGCAAATACACCGTGCCCGAGAACTGGAACTACAAGGTGGCGCGGGA
ACTCTTCATCGAACCGGAGTAGCTGATGCCGACTCCATAGATCTCAAATG
GGTCGAGCCGGATGAGGAGGGCCTTGTCAAGTTTTTTCTGCGGCGACCGG
CAGTTCAACGAAGAGCGCGTCGCAACGTGCCAAAAAGCTGATGAAATCCA
AGCAGCCCAGACTCAAGGTGAAACTCGATATAGCTTCCTTTAAACACTTG
CCAGCCACTTCCGAAATGCCACAAACGCCTGCAACCGTAGTCGAGGAAGC
AGAAGACGCAATAACAAA
UFO09787.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fen1-RA | 1378 | CG8648-RA | 122..1239 | 4..1118 | 5020 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16854253..16855195 | 1030..90 | 4395 | 99.2 | Minus |
| 2R | 25286936 | 2R | 16855255..16855343 | 92..4 | 430 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:29:44 has no hits.
UFO09787.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:25 Download gff for
UFO09787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fen1-RA | 1..999 | 9..1005 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:39:23 Download gff for
UFO09787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fen1-RA | 119..1125 | 1..1005 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:04 Download gff for
UFO09787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fen1-RA | 119..1125 | 1..1005 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:04 Download gff for
UFO09787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16854278..16855194 | 91..1005 | 99 | <- | Minus |
| 2R | 16855257..16855344 | 1..90 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:39:23 Download gff for
UFO09787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12741783..12742699 | 91..1005 | 99 | <- | Minus |
| arm_2R | 12742762..12742849 | 1..90 | 96 | | Minus |
