UFO09788.5prime Sequence
1118 bp (1009 high quality bases) assembled on 2011-09-19
> UFO09788.5prime
CAGTCGACATGGGTTTTCACATGGGACGACAGCTGCTACTCTCCGGATTC
CTGCTGGTGATGCTTCAGATGGTGACCCAAACGCAGGCCAGGCCGCAGGA
TGTGATCACAGTTGCTGGCGAGGAGACAGAGGTGGTGATCAAGCGGGAGG
GCGATGACGATGGAGACGACGATGACTCCTCCTCCGAGGAAACAGTCGAG
GATTCCGAGGAAAGCAGACGCAGACGACGCGAGGTGAATACGGACAACAC
GCCATCGGCTCGAGCGGTTATTCCAGGCGAGCAAGTAGTCCCCATTCTCT
TGGAGGCCATTCTTCCCAGCGTGGATGCAGCGGGCGATCGCTTCGCAAGA
TCTGTGCAATTTCTGAAAAACTTGACCCCTGGCTCTGAATTGTTTGCCGT
CGAGAAGAACGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGA
AACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAATCCT
TTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATA
TATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCAGAAGCGATGA
AAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAAGGTGAAACTATT
CCATATCAACCAGCTACGTCTTTCATGCCATACGAATTCCGGATGACATC
ATCAGGCGACAAGAATGT
UFO09788.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Os-C-RC | 550 | CG3250-RC | 17..421 | 9..413 | 2025 | 100 | Plus |
| Os-C-RD | 538 | CG3250-RD | 17..409 | 9..413 | 1835 | 97 | Plus |
| Os-C-RB | 604 | CG3250-RB | 17..285 | 9..277 | 1345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7979114..7979295 | 96..277 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 7979347..7979485 | 275..413 | 695 | 100 | Plus |
| 3R | 32079331 | 3R | 7978975..7979065 | 9..99 | 455 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..290 | 979..1041 | 120 | 71.9 | Plus |
UFO09788.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:25 Download gff for
UFO09788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Os-C-RC | 17..425 | 9..419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:39:53 Download gff for
UFO09788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Os-C-RC | 17..425 | 9..419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:06 Download gff for
UFO09788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Os-C-RC | 17..425 | 9..419 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:06 Download gff for
UFO09788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7978975..7979064 | 9..98 | 100 | -> | Plus |
| 3R | 7979117..7979294 | 99..276 | 100 | -> | Plus |
| 3R | 7979349..7979485 | 277..413 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:39:53 Download gff for
UFO09788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3804697..3804786 | 9..98 | 100 | -> | Plus |
| arm_3R | 3804839..3805016 | 99..276 | 100 | -> | Plus |
| arm_3R | 3805071..3805207 | 277..413 | 100 | == | Plus |
