UFO09793.5prime Sequence
1107 bp (974 high quality bases) assembled on 2011-09-19
> UFO09793.5prime
CAGTCGACATGCTGGCTCATAACCTAGGTTTCCATAAAAAGCGCCTTTTT
TCAAACATGAAGGCTGTTTTACAGGATCGGGGTGTCATAGGCTTATCCCT
CGAAGAATGCGATTTGGAAAGAACTTTGCTTGGAGGACAGAGTTTCCGAT
GGCGATCCATATGCGATGGTAATAGAACGAAATATGGCGGAGTGGTGTTC
AACACCTACTGGGTGCTCCAGCAAGAAGAATCCTTCATAACTTACGAGGC
ATACGGAACCAGCAGTCCTTTGGCCACGAAGGACTATTCTTCCTTGATAT
CTGACTACCTACGTGTTGATTTCGACCTAAAGGTCAACCAAAAAGATTGG
TTAAGCAAAGATGATAACTTTGTGAAGTTCTTGAGTAAGCCTGTGCGCCT
CCTTTCTCAGGAGCCGTTCGAAAACATTTTTAGCTTCCTTTGCAGTCAGA
ACAATAACATCAAGCGCATATCATCTATGATTGAATGGTTTTGCGCTACA
TTTGGCACCAAGATTGGTCACTTCAATGGTGCCGATGCGTATACATTTCC
CACGATAAATAGATTCCACGACATCCCATGCGAGGATCTTAATGCCCAGC
TAAGGGCTGCCAAGTTCGGTTATCGGGCCAAGTTCATAGCACAAACGCTG
CAAGAGATCCAGAAAAAAGGGGGGACAAAACTGGTTCATAAGCCTAAAGA
GCATGCCGTTCGAAAAAGCTCGCGAGGAGCTGACACTGCTACCCGGAATC
GGATACAAAGTGGCCGATTGCATCTGCCTTATGTCAATGGGTCACTTGGA
GTCAGTGCCCGTCGACATTCATATTTACAGAATTGCCCAAAATTACTACC
TGTGCCATCTAACCGGCCAAAAGAACGTAACCAGAAGATTTACCGAGGAG
GTCTCGAAACATTTTCAAAAGCTACACGGAAAGTATGCCGGTTGGGCTCA
AGCTATTCTTCTTTTTCTGCCGATTTGAGTCATTTCAAATACTTCACAGT
TGCTTGTAGGAAAAAATCATAAAAACTAAAAGGCAGCTTTCTGACATCGT
TGGGCGCGCGGGCCAGGTATTGGTCTATCCTATTCCTAATCCTAATCTAT
CCAACTA
UFO09793.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ogg1-RA | 1307 | CG1795-RA | 162..1180 | 9..1025 | 4800 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8691064..8691551 | 466..954 | 2240 | 98.6 | Plus |
| X | 23542271 | X | 8690685..8691003 | 148..466 | 1595 | 100 | Plus |
| X | 23542271 | X | 8690488..8690627 | 9..148 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:29:54 has no hits.
UFO09793.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:27 Download gff for
UFO09793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ogg1-RA | 156..1185 | 5..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:40:50 Download gff for
UFO09793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ogg1-RA | 159..1188 | 5..1031 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:10 Download gff for
UFO09793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ogg1-RA | 159..1188 | 5..1031 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:10 Download gff for
UFO09793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8690485..8690627 | 5..148 | 98 | -> | Plus |
| X | 8690686..8691003 | 149..466 | 100 | -> | Plus |
| X | 8691065..8691551 | 467..954 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:40:50 Download gff for
UFO09793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8584518..8584660 | 5..148 | 98 | -> | Plus |
| arm_X | 8584719..8585036 | 149..466 | 100 | -> | Plus |
| arm_X | 8585098..8585584 | 467..954 | 98 | -> | Plus |
