UFO09794.5prime Sequence
1090 bp (951 high quality bases) assembled on 2011-09-19
> UFO09794.5prime
CAGTCGACATGTACTCTGACAATGATGACACCCACAAAAACTCGAATGGA
TCGCATCGCATACGGAACGTGCTGACTTTGGAGGAGCGTGTGGCTGCCAT
CCGACAGTACGACATTGTGCCCATGTACAGTAAGATTGCGAGGAACTTTA
ATTGCAGCTGGGAGCAAATCAAGAGCATAGTCTCCAATCGGGAAGCCATC
CTGGAGTTCCACAAGGCCACCAATCGGCTCAGCCAGCCGGCCAATAAGGA
TGCCGAGCTGCGCCGGCGCAAGCTGAACTTTCTGGGCCACTGCCTGTACG
AGTACATCCAGAGGGCCCAGTTTTACCTCCACAGCGATGTGAACGAGGAG
ATGATCCGCAACCGTGCGATCGAGTTCCGGGATCTCATGCAACTCGATGG
TTTTGTGCCGAACAAACCGTGGATCAATCACTTCAAGGCCGCCTATAATA
TAACACTGTCGAATCGTCAGATCACGATAGTCCGCCGACCACCACGATCT
ATGGACTTGAGGGACATTATGTCGTACTGTGGACGACACACCTCGATGTC
TTGTAGCTTAGCGCCTAGATCGCCGGAACCTGCGCTCACTAGCAGTGATC
GACCTCTTTATCGTACAAAGACATTGGTCACCACCTCTAGCCAAAATCAA
GCCACCTCGGATGAAGTGCACCTGCGTAGAAAGCGAAAGTTAGCGTTCCT
GGAGAAATGCGTTTATGAGTACATCCAGCGATCACAGTTGGTTCGCCAGG
GTCGTCTTGACCTAGACAATTTGCGCTTTGTGGCCATTAGTTTAAGGGAC
ATCCTCAAAATCGACTCCTTCTTTCCCGACAAAGTGTGGTACGAGCACTT
TAAGAGTCGCTATAACTTTAATTTCACGGTGGGGAGTTCAGGTGACGAAC
CGCCGCTTGCCGTGTTTCCCTGGACCTAAGAGATATAGTTAGTTATTGCG
GCCGGAACGAACATAAAGATCCACGCTGGGACACAGAGGTCGCAGGAGAC
CTGAGCAGAGCGACAGCCAGAGGTGGACCATGCCTACAGGTGGAACAACC
CGAGAAATTGAGCACGAGAAGACCATGAATGCCTGCCCAT
UFO09794.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13895-RA | 1924 | CG13895-RA | 231..1325 | 2..1090 | 4910 | 97.2 | Plus |
| CG13895-RB | 1945 | CG13895-RB | 271..1346 | 21..1090 | 4845 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 706679..707622 | 966..21 | 4555 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:29:57 has no hits.
UFO09794.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:27 Download gff for
UFO09794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13895-RA | 226..1282 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:41:18 Download gff for
UFO09794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13895-RA | 230..1286 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:13 Download gff for
UFO09794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13895-RA | 230..1286 | 1..1053 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:13 Download gff for
UFO09794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 706586..707622 | 21..1053 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:41:18 Download gff for
UFO09794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 706586..707622 | 21..1053 | 97 | <- | Minus |
