UFO09795.5prime Sequence
1053 bp (978 high quality bases) assembled on 2011-09-19
> UFO09795.5prime
CAGTCGACATGGGTAAGGACTACTACAAAATCCTGGGTCTGCCCAAAACT
GCCACCGACGATGAGATCAAAAAGGCCTACAGGAAACTGGCCCTGCGTTA
TCATCCGGACAAAAACAAAGCCGCCAACGCCGAGGACAAGTTCAAGGAGG
TCGCCGAGGCGTACGAGGTTCTTTCGGACAAGAGCAAGCGGGAGGTGTAC
GACAAATACGGCGAGGATGGTCTCAAGAGCGGAGGCACACGAAACGGCGG
TCCGTCGAGCAACTCGTTTACATATCAGTTCCACGGCGATCCGCGGGCCA
CCTTCGCCCAGTTCTTTGGCAACAGCAATCCGTTCGCCTCGTTCTTCGAC
ATGGGCGACAACCTGTTCGACAAGAAGGTCTTCGATCTGGACACGGAACC
CGATTTCTTCTCCTCGCCCTTTGGCGGCATTGGGTCGCGACATGGTCTGG
GAAGTGGCTTCAGGCCCTCTTTCAGATCACACTCCTTCAATGTGCACACG
CCGTTCAAGAAGGAGCAGAAGCAGGATCCGCCCGTCGAACACGATCTCTA
TGTGACGCTGGAGGAGATCTACCACGGCTGTGTTAAGAAAATGAAAATCT
CCCGGCGCATCGTTCAGGCGGACGGCAGTTCCCGCAAGGAGGAGAAGTTC
CTGGCGATATCCATCAAGCCCGGCTGGAAGTCCGGCACCAAAGTCACCTT
CCAGAAGGAGGGCGACCAGGCGCCCGGAAAAATTCCCGCCGACATTGTGT
TCATCATCCGGGACAAGCCGCACGCCATGTTCAAGCGCGAGGGCAGCGAT
CTGCGCTACACGGCGAGACTGACGCTCAAGCGGGCTTTGTGCGGCGTTGT
CTTCCAAGTTCCTACCATGTCCCGGCGACAGTTGCGCATCCGCACCATGC
AGAGATCATCAAGCCGAACACGGTGAAGCGCCTCCAGGGATACGGCTGCC
ATTCCCCAAAGGATACGACGCGCAAGGGCGACCTCTGTGCTCGACATTCA
GTGCCGGAGAACGACGCAGGTCAGATACTACTTGCGCAGTATTATATACT
AGT
UFO09795.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5001-RD | 1755 | CG5001-RD | 339..1348 | 9..1011 | 4720 | 98.4 | Plus |
| CG5001-RA | 1833 | CG5001-RA | 417..1426 | 9..1011 | 4720 | 98.4 | Plus |
| CG5001-RB | 1893 | CG5001-RB | 477..1486 | 9..1011 | 4720 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:29:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1192253..1192623 | 461..831 | 1840 | 99.7 | Plus |
| 2L | 23513712 | 2L | 1191968..1192199 | 233..464 | 1160 | 100 | Plus |
| 2L | 23513712 | 2L | 1191684..1191910 | 9..235 | 1135 | 100 | Plus |
| 2L | 23513712 | 2L | 1196215..1196368 | 833..985 | 505 | 92.9 | Plus |
| 3L | 28110227 | 3L | 5751369..5751551 | 233..51 | 300 | 77.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:30:01 has no hits.
UFO09795.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:13:28 Download gff for
UFO09795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5001-RA | 410..1424 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:41:49 Download gff for
UFO09795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5001-RB | 472..1486 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:14 Download gff for
UFO09795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5001-RB | 472..1486 | 1..1011 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:14 Download gff for
UFO09795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1191970..1192198 | 235..463 | 100 | -> | Plus |
| 2L | 1192256..1192625 | 464..833 | 99 | -> | Plus |
| 2L | 1196216..1196371 | 834..987 | 94 | -> | Plus |
| 2L | 1191679..1191909 | 1..234 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:41:49 Download gff for
UFO09795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1191679..1191909 | 1..234 | 98 | -> | Plus |
| arm_2L | 1191970..1192198 | 235..463 | 100 | -> | Plus |
| arm_2L | 1192256..1192625 | 464..833 | 99 | -> | Plus |
| arm_2L | 1196216..1196371 | 834..987 | 94 | -> | Plus |
